LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g01021	ATGAAGCCGACGTTGATGCAGTTCAACGTTAGTATGATTTTGGACGTTGACATGGTTGCAGGGTGGATTGATAGGAATGGAACGCCAAGAGGTAAAGAGAATGCAGTAGCAGCTTTGCTGGAGCTGTGCAGGAGTGATGGTGCAGCGGCAACTGAGAAGGTGGTTAGGGCGCCTGCCTTGGCCGGCTTGTTTCGAAGAATGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTGGGTGAGAGCGTTGTAAAGCCAGGGTCTAGGCTCTGTGCTACTGAATTTGGGAATAATAGTTCATGGGTATCACCTTCTGGCCGCTTTGCTTTTGGCTTTTACCCACAAGGTAATGGCTTTGCTGTGGGTATATGGCTGCTTGGTGGTCATAGTCCACCCCAAAAAACTGTTGTGTGGACTGCTAACCGTGATAGCCGCCCACTCCCCTCAAATTCAACGTTGAACATCACCACCACTGGTATGCGGCTTTTCCCAAGTGGGAGAGAAAGCCTTGCTCTCATTTCAACTGTTAATACAACTTCAGCATCTATGCTTGATTCTGGCAACTTTGTGCTCTATAGCAATGGCAGCACTGTTGTTTGGCAAAGCTTTGATTATCCAACTGACACCTTACTAGGAGGTCAGAATTTAACTGGAGGCGACCGACTGGTTTCCAGTGTGTCTGAAAAAGACTATTCGAGTGGAGCTTTCTTTATGGTCATGCAATTAGATGGAAACCTCGTTGCTTATCCAAAGAACAGCGCAGCATCTAGCATTGATGCTTACTGGGCTTCAAACACTGTAATGTTCGCAGAGCTCGGGCTTGATGCCACGGGCTCTCTTTGCATTGGGATTTCGTGTTTGAACAAAAATTTTAGCCCTGGAAACAAATCACAGAACACAAGTTCAATCTATCGTGCAACACTTGTTGCAGACGGAAACTTGATACTGTATGAGCACCAATTTGAGGACAGCAGTGGCTCTACGAATGTCCGAGTACTGTGGAATACCTCGATTGGGAAATGTCAAATCAAAGGGTTTTGTGGGTTTAACAGTTATTGCTCAAACGCAACAGGCGATGCGGTGTGTGAGTGTTTTCCTGGTTTCGTCCCCTCCAACAGCAGTCGTAACGCGTCTCAGGACTGCATACTGGCCTATGCACTAGATGGTTGCCGAAGCAGTGAAGCCCCAAACCAAATGATTTTGTATAATATTACTCAGTTGGAACATGTGTCTTGGTTCGAAACTCCATATTCTGTCGTACCGATGAAGGAGAAAGAGTGCGAAAAGTCTTTGCTGGATGATTGTGATTGCGTGGCAGTGTTATATTCGAATGGCAACTGCGAAAAATACGGACTCCCGCTAACATATGGCAGATGGCTTCAGAACTTATCCGTCGTTGCACTCTTCAAGAATGTTTCAGGAACCGTCCAAAATCCAATTCCAAGCAACTTCTTTCCGAAGCCTAAATCCAAGGTGGTTACGGATAACAAGAACAGGCTGATAATGATTCTGGCCTTTACTTTGGGTTCCATTTCATTCTTATCTTTGATATTTGCCGTGTCCATTTTCTTCACTTACAAGCGGAAGGTGCATAAGTATACAACGTTGTCTGGAAGTGAGAACCTGGGATTTACTGGAGAATGTTCTCTGCGTTCGTTTTCTTTCGATGAACTTGTCAAATCCACTGGAAGCTTCACGGAAGAGATAGGGAGAGGATCATTTGGAGCGGTTTACAGAGGCGAAACAGAAGGGCAACTAAACAGGCTTGTTAAGGAGGATGAAGGTGTTGAGTGGAAGATAATGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGACACTCCTTCTCTTCGCCCCTTGATAAAGAATGTAATCTTGATACTGAAATCATCAGATTCTAATGTTATGGACATCGTTGCCGTGATAATAACTTGCCTGTTGCTCATGTCTGTGGGGACAAGAGTTGAAACGCATCAGATACCACTCGGAACCATACTTGCTGCACAGAGTACTACTACTCCTTCTTTCTGGCTTTCTCCTTCTGCTCAATTTGCATTTGGTTTTTATCCACTAGAACAAGGTGGTGACTTTGTCGTTGCAATTTGGCTGGTTAGCGGGGAGAACAAGACAGTGGTATGGACTGCGCAACGGAACGATCCTCCGGTAACCTCAGGTGCAAAGCTACAACTAAACATGGACGGTAAACTCGTACTAACAGACGACCAACGAGAAGAGAAGGTTATTGCAGCTAATTTCAGTGCAAAAGCTGCCTCTGCCTCCGTGCTCGATTCTGGAAACTTTGTGCTCTACAACAGTAAAAACGACATCATGTGGCAGAGTTTCGATTACCCAACAGATACTTTGTTAGGTGGTCAATCTCTTCCAAACGGACATCAACTGGTGTGCAATTCATCACAGAACAACCATTCCAGTGGACGTTTTCGTCTCAAGATGCAGGATGACGGAAATCTTGTTCTGTATCCAGTGGACACAACTGACACAGGAACGGATGCTTACTGGGCCTCTGATACTAGTTTTGCTTTGAATCGCCGTGACCAATATCAGTACCCTCTCGACGAAAATGGTACTCTGCGGATTCTGAATGAAAGCAGTCATGGGAGGACTAAGGTGATTCTAAGTGTAATCAGTAATTCATCTTTAGCTGACGATGGAAACCGGATCATCTATCGTGCAACCCTGAATTATGATGGGATATTTCGTCTGTATGCGCATTTTAAGAATGGTAGTACCCAAAATTTGGCAAAATGGCCGGATGTTAAAAGCATGTGTTCAGTGAGAGGTTTTTGTGGATTCAACAGCTACTGCACATTAGATGACGCTCAACCATTATGCTCTTGTCTTTCGGGTTTTATCTCCATATATCCAAACGACTCCACTCTGGGCTGCAAAAGGAGCTTTCTGAAAGAGGATTGTTGGGGGAAGAAAGACAGCGCAACCTCGTATGAGATGAAGTCGGAGGAGAATATTGCGTGGGTGGATGTTCCTTATTTCAAGGCTGTAATGTCACAAGAAGAATGCTCCGCTGCTTGCTTGGCTGATTGCAAGTGTGAGGCCGCATTTTACGACGGTGTAAGCTGCATGAAACAAAGGCTGCCTTTGAGATATCTCAGACGGATATTAAGCGATTACAGAACCTCGGTGTTACTGTGGAAAGTGGGAGACAGCCTCAGCAATCGGACGGAAAACGATAATCCTGTGCCTGTGCCTGGACCACCACCAATCAAGGCAACAAGTAATAAAGCAACGGTGCATATTATTGTCATTACATCCGTATTTTCGCTGCTTTTATGTTCAACCATTGTCATATCCAGCCACTACACGTACAAGATTCGGATTTTGAAGTATAAAAGATTGATGGAAACTGGGAACTTGGGTCTGAATGAAGAGGTGACTTTGAGAAGGTTTTCATACAGCGAACTCAAAAGAGCAACATATAATTTCAAGATAGAACTAGGAAAAGGGTCTTTTGGAGCAGTTTACAAGGGGGCGTTGGACAAAGGAAAACTCAATAAGCTTTTTCCTTGGGAAGTGGTGGATGACAAAACTGCCGTGGAAAATATGGTTAAAGTGGCACTTTGGTGTATCCAAGATGAACCTTTTCTTCGCCCAACAATGAAGAGTGTCGTATTGATGTTAGAAGGGGTCACCGACATAGCAATTCCTCCTTGTCCCGCTTCCAATTCTACTTGA	3741	0.4475	MKPTLMQFNVSMILDVDMVAGWIDRNGTPRGKENAVAALLELCRSDGAAATEKVVRAPALAGLFRRMAASLARVFQRCENASLHYGGLGESVVKPGSRLCATEFGNNSSWVSPSGRFAFGFYPQGNGFAVGIWLLGGHSPPQKTVVWTANRDSRPLPSNSTLNITTTGMRLFPSGRESLALISTVNTTSASMLDSGNFVLYSNGSTVVWQSFDYPTDTLLGGQNLTGGDRLVSSVSEKDYSSGAFFMVMQLDGNLVAYPKNSAASSIDAYWASNTVMFAELGLDATGSLCIGISCLNKNFSPGNKSQNTSSIYRATLVADGNLILYEHQFEDSSGSTNVRVLWNTSIGKCQIKGFCGFNSYCSNATGDAVCECFPGFVPSNSSRNASQDCILAYALDGCRSSEAPNQMILYNITQLEHVSWFETPYSVVPMKEKECEKSLLDDCDCVAVLYSNGNCEKYGLPLTYGRWLQNLSVVALFKNVSGTVQNPIPSNFFPKPKSKVVTDNKNRLIMILAFTLGSISFLSLIFAVSIFFTYKRKVHKYTTLSGSENLGFTGECSLRSFSFDELVKSTGSFTEEIGRGSFGAVYRGETEGQLNRLVKEDEGVEWKIMERMVKVGLWCVQDTPSLRPLIKNVILILKSSDSNVMDIVAVIITCLLLMSVGTRVETHQIPLGTILAAQSTTTPSFWLSPSAQFAFGFYPLEQGGDFVVAIWLVSGENKTVVWTAQRNDPPVTSGAKLQLNMDGKLVLTDDQREEKVIAANFSAKAASASVLDSGNFVLYNSKNDIMWQSFDYPTDTLLGGQSLPNGHQLVCNSSQNNHSSGRFRLKMQDDGNLVLYPVDTTDTGTDAYWASDTSFALNRRDQYQYPLDENGTLRILNESSHGRTKVILSVISNSSLADDGNRIIYRATLNYDGIFRLYAHFKNGSTQNLAKWPDVKSMCSVRGFCGFNSYCTLDDAQPLCSCLSGFISIYPNDSTLGCKRSFLKEDCWGKKDSATSYEMKSEENIAWVDVPYFKAVMSQEECSAACLADCKCEAAFYDGVSCMKQRLPLRYLRRILSDYRTSVLLWKVGDSLSNRTENDNPVPVPGPPPIKATSNKATVHIIVITSVFSLLLCSTIVISSHYTYKIRILKYKRLMETGNLGLNEEVTLRRFSYSELKRATYNFKIELGKGSFGAVYKGALDKGKLNKLFPWEVVDDKTAVENMVKVALWCIQDEPFLRPTMKSVVLMLEGVTDIAIPPCPASNST	1246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g01021	1246	SMART	blect_4	678	794	IPR001480	-
	Vimu7g01021	1246	SMART	blect_4	101	215	IPR001480	-
	Vimu7g01021	1246	SUPERFAMILY	alpha-D-mannose-specific plant lectins	144	275	IPR036426	-
	Vimu7g01021	1246	FunFam	Serine/threonine-protein kinase	794	930	-	-
	Vimu7g01021	1246	ProSiteProfiles	Bulb-type lectin domain profile.	795	931	IPR001480	-
	Vimu7g01021	1246	ProSiteProfiles	Bulb-type lectin domain profile.	95	213	IPR001480	-
	Vimu7g01021	1246	SUPERFAMILY	alpha-D-mannose-specific plant lectins	707	852	IPR036426	-
	Vimu7g01021	1246	Gene3D	-	672	793	IPR036426	-
	Vimu7g01021	1246	Gene3D	-	100	213	IPR036426	-
	Vimu7g01021	1246	FunFam	Serine/threonine-protein kinase	665	793	-	-
	Vimu7g01021	1246	Gene3D	-	794	927	IPR036426	-
	Vimu7g01021	1246	Gene3D	-	214	335	IPR036426	-
	Vimu7g01021	1246	ProSiteProfiles	Bulb-type lectin domain profile.	216	338	IPR001480	-
	Vimu7g01021	1246	ProSiteProfiles	Bulb-type lectin domain profile.	672	792	IPR001480	-
	Vimu7g01021	1246	SUPERFAMILY	alpha-D-mannose-specific plant lectins	816	919	IPR036426	-
	Vimu7g01021	1246	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	1184	1241	-	-
	Vimu7g01021	1246	Gene3D	Phosphorylase Kinase; domain 1	1140	1207	-	-
	Vimu7g01021	1246	Pfam	D-mannose binding lectin	144	225	IPR001480	-
	Vimu7g01021	1246	Pfam	D-mannose binding lectin	720	804	IPR001480	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g01021	Vimu-Chr7	9937722	9946509	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g01021	19	89	U-box Gene Family	AT1G29340	63.095	1.65e-19	92.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g01021	-		-	gmx:100815958	664.07