Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01011 ATGCCCTGGTCTTATGCTTCCCCATATGTGCCTCCGCATCACAGCTCTAACTACATTCCACCTTCTGATGATCCTGCACACAACGGATTTTCCCGTGCTGCCGCTCCCCGTCCTGGACCCTGGCAACGCGCCGCCAGCGCCGGCCGTGCTGCCTCCGCCGCCCGTGGATTCTCTCGCCCCCGTGAGCCTTCTCACCGGAACTCACGTTTCCCCGTGGAGGAACAAGAAAATGGCGACGCTATTAACTTTGACGCGTACGAGTCTGTCCCGGTGGAAGCGAGTGGGAAGGACGTGCCTCCGCCGGTGAACGTCTTCGACGATACGGACTTGGACGAAGGGTTGAAGAGGAATATCAAGCGATGCAAGTACGTGAAACCCACGCCCGTTCAGCGTCACGCGATTCCCATAGCTACCGCGGGCCGGGACCTCATGGCGTGTGCACAGACCGGGTCGGGGAAAACGGCGGCGTTTTGCTTTCCCATCATATCTGGGATTTTGAAGGGTCGCTCTTCTTCTGGGTTTTCGCCTGTATCTCGTGGTGTCGCTGTTGCGTACCCCACTGCGCTTATTTTGTCTCCTACGAGGGAGTTATCGTGCCAGATACGCGATGAAGCGAACAAATTTGCTTTTCAAACTGGAGTGAAGGTTGTTGTTGCCTATGGTGGGTCTCCTATCATTCAGCAGCTGCGCCTTCTGGAGAAGGGGGTTGACATATTAGTTGCCACTCCTGGGCGTTTGGTGGATATTATTGAAAGAGAAAGGGTTTCGTTGGCGAGGATTAAGTACCTTGCATTAGACGAAGCTGATCGTATGCTGGACATGGGTTTCGAGCATCAAATACGCAAGATTGTGGAGAAAATGCACATGCCACCGCCTGGTATCAGACAGACATTGTTGTTTAGTGCAACGTTCCCTAATGATATACAGCATTTCATTGATGACGCAGAAGCTAGCTTCGGACTTTTTGTCGGACTACATATTCCTAAGATTGAGCTTGTACAGGATACAGACAAAAGAGACAAACTTGTTGCTCATCTTCGTAGCCAAAAGGTGCATGGGACCAATGGGAAGGTGATAAGTGTGTATGCTCGTTTGACAATTGGTTTGCAACATGCTTTGACTCTTGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTAGAAAGCTGGTTATCGAAAAGTGGCTTTCCAGCTATTGCCATACACGGAGACAAAGTTCAATTGGAAAGAGAACGGGCTTTAAGATCTTTTAAATCTGGACATACTCCTATTTTGGTTGCAACCGATGTTGCTTCGAGGGGATTGGATATCCCGCATGTGGCTCATGTCATAAACTTTGACTTGCCTAGAGACATAGATGACTATGTACACAGAATTGGACGAACAGGCCGTGCAGGCAAATCTGGTTTAGCCACTGCTTTCTTCAGCGACAAGAACAGTCCAATGGCAAAGGCTCTTGTTGGACTGTTGCAGGAGGCAAACCAAGAAGTTCCTTCTTGGCTCAACCAGTTTGCAGAGTGTTCCTCCTCAGGTGGGCGTGGTCGTGGTTATGGATCACAGCGTTACAGCAGTGGTAGCTATGGTGGTCGTGATTTTCGAAATCCCACTGAACCTGAGGTGCAAAGCTACAACTGCTACGGTTCTCATGGCAATGCAGATAATGGTGTAGAATCTTTTAGTACAACCTCATACGTTGATACCTCGTACGACATGCAAAACTACCCTATAGAAACCTCTTTTGAGAATTTGAATATAAGGTGCAGTTACGATGAAGGTGATGGTAACTCTGTTGAAGTGTGTGGAGGTGTAACGGTTGGTGAAGAGGGGCCTAGTGGTTATGCATCTATTGTTCCCACTGGATGGGACTAG 1869 0.4912 MPWSYASPYVPPHHSSNYIPPSDDPAHNGFSRAAAPRPGPWQRAASAGRAASAARGFSRPREPSHRNSRFPVEEQENGDAINFDAYESVPVEASGKDVPPPVNVFDDTDLDEGLKRNIKRCKYVKPTPVQRHAIPIATAGRDLMACAQTGSGKTAAFCFPIISGILKGRSSSGFSPVSRGVAVAYPTALILSPTRELSCQIRDEANKFAFQTGVKVVVAYGGSPIIQQLRLLEKGVDILVATPGRLVDIIERERVSLARIKYLALDEADRMLDMGFEHQIRKIVEKMHMPPPGIRQTLLFSATFPNDIQHFIDDAEASFGLFVGLHIPKIELVQDTDKRDKLVAHLRSQKVHGTNGKVISVYARLTIGLQHALTLVFVETKRGADALESWLSKSGFPAIAIHGDKVQLERERALRSFKSGHTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPMAKALVGLLQEANQEVPSWLNQFAECSSSGGRGRGYGSQRYSSGSYGGRDFRNPTEPEVQSYNCYGSHGNADNGVESFSTTSYVDTSYDMQNYPIETSFENLNIRCSYDEGDGNSVEVCGGVTVGEEGPSGYASIVPTGWD 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01011 622 CDD DEADc_DDX3_DDX4 105 310 IPR044763 GO:0003724|GO:0005524
Vimu7g01011 622 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 76 505 - -
Vimu7g01011 622 CDD SF2_C_DEAD 357 475 - -
Vimu7g01011 622 SMART ultradead3 122 335 IPR014001 -
Vimu7g01011 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 484 IPR027417 -
Vimu7g01011 622 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 322 IPR014001 -
Vimu7g01011 622 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 103 131 IPR014014 GO:0003724
Vimu7g01011 622 FunFam Probable ATP-dependent RNA helicase DDX4 66 323 - -
Vimu7g01011 622 Gene3D - 60 317 IPR027417 -
Vimu7g01011 622 Pfam DEAD/DEAH box helicase 127 309 IPR011545 GO:0003676|GO:0005524
Vimu7g01011 622 SMART helicmild6 385 466 IPR001650 -
Vimu7g01011 622 MobiDBLite consensus disorder prediction 59 73 - -
Vimu7g01011 622 Gene3D - 328 508 IPR027417 -
Vimu7g01011 622 FunFam ATP-dependent RNA helicase RhlB 327 509 - -
Vimu7g01011 622 MobiDBLite consensus disorder prediction 1 77 - -
Vimu7g01011 622 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 505 IPR001650 -
Vimu7g01011 622 Pfam Helicase conserved C-terminal domain 368 466 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01011 Vimu-Chr7 9870495 9873372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01011 105 482 Eukaryotic Initiation Factors Gene Family AT3G13920 33.862 4.08e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01011 K11594 - gmx:100791226 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01011 7 9870495 9873372 Vimu7g01011 7 9870495 9873372 ECH