Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01003 ATGGACGAAGATTCGCTCAAACGCAACACTGATTGCGTTTATTTTTTGGCCTCTCCCCTCACTTGCAAAAAGGGGGCTGAATGTGAGTATCGGCACAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGGTATCTGGCCAATGCCTGAATCCAACGTGTGCTTTTAGACACCCTCCTCTGGATGGGCACACTGGAGTGCCAGCGCCATCTGAACCTGCACAGATTTCATTGCCTGCAAACAAGACAATGGTTCCGTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAAATGCTTTTTTTTGCATGGGTCTGATGATAGCATTTTTACTGTAAAACCTGTGAAGAATGATAACGGAAGCACCGATGCACGCAATCTAGAAAATAAAACATCATCAGGAAATGGAACTGCTGTAGCGTCAGTACCAACTCACCAATCTTTAACTGCTCCAAAGCATTTGTCTGATTTTAAGCGTCAGCCCAAGGAACAGTTACCGTTATCCAAAAATGTTAAGCAGCAAGGTGATTCCCTAGTGATATCTGCTTCTGAATACAAAGAAGCTGCAGTGAGTGGGTCAGACTCTCCGTTTCCAGATGATGGCTTTGTACATAATGTATCTCATTTACGCACTGACCGGAGTTCGGAGGAGCAAGTAAATAGTCAAATTGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGACGTTCTTGTTCACAATGAATTGGAGAACTTGGGTTACGAGGAAGATTCTGAATATTTACCAGTGCTTGATAGGAATGAGCAAGAGCTGAATGAACAGTACTTGGGGTATGAATTTAAGGATCCAGTTGAGTATGATACTATGTGCCCGGAAGCTGATATTCTGTATCCACAAGAAACATATGATGGTTACAGATGTTTTGATAGTGACCTTGCTCATGGTAATGGCAGAACAGTTCGTACGTATTCCAGAGATATATTCTTAGATTCTATATACTCCAGGAAAAGGATTCGGATGTCAGCTGAGGTGGCTGCCTATGACAATAATTTAGATCTACGTGACCATCTGAGGAGACGTAGAGAAAATAATGGGCCTCCCATTGCAGGTTTCTTAAGAAGACAAGAATCGTCTTCTTTGATGATGCGAAACCAGGAAAGGCACCAGAGGCCTGGCATTGACCAGCGGCCAAGTAGAAGATTGACATCACAACTAGGATATAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATCGCTAACAAGCACAGGTTATTCAGGCGTTCCCAGCAACACAAACCAAGGAAGCATTATAGAGAAAAGCCAGCGAAACGACCATTTCTGTCATCTAAAATATCCAGGAAACCAGTTTTTAAGCAAAGGGGATTTGTTGAGGAATCTACTGCATTTTCAGGACCTAAGACTCTTGCAGAAATTAGAGAAGAGAAGAAGAAGGCTGAAGAAGGTTTACATTGGAAACGCCCATCAACTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTGAAGGACAAAAGGACTATGGATTAG 1560 0.4301 MDEDSLKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWVSGQCLNPTCAFRHPPLDGHTGVPAPSEPAQISLPANKTMVPCYFFFNGFCNKGDKCFFLHGSDDSIFTVKPVKNDNGSTDARNLENKTSSGNGTAVASVPTHQSLTAPKHLSDFKRQPKEQLPLSKNVKQQGDSLVISASEYKEAAVSGSDSPFPDDGFVHNVSHLRTDRSSEEQVNSQIEPEERWESSPHSPGFDVLVHNELENLGYEEDSEYLPVLDRNEQELNEQYLGYEFKDPVEYDTMCPEADILYPQETYDGYRCFDSDLAHGNGRTVRTYSRDIFLDSIYSRKRIRMSAEVAAYDNNLDLRDHLRRRRENNGPPIAGFLRRQESSSLMMRNQERHQRPGIDQRPSRRLTSQLGYSAIDSIGEVETLSIANKHRLFRRSQQHKPRKHYREKPAKRPFLSSKISRKPVFKQRGFVEESTAFSGPKTLAEIREEKKKAEEGLHWKRPSTDFQDPKPLSEILKDKRTMD 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01003 519 Gene3D - 2 63 - -
Vimu7g01003 519 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Vimu7g01003 519 Gene3D - 71 121 - -
Vimu7g01003 519 MobiDBLite consensus disorder prediction 215 239 - -
Vimu7g01003 519 MobiDBLite consensus disorder prediction 215 237 - -
Vimu7g01003 519 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Vimu7g01003 519 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Vimu7g01003 519 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Vimu7g01003 519 MobiDBLite consensus disorder prediction 428 445 - -
Vimu7g01003 519 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Vimu7g01003 519 MobiDBLite consensus disorder prediction 427 450 - -
Vimu7g01003 519 MobiDBLite consensus disorder prediction 484 519 - -
Vimu7g01003 519 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Vimu7g01003 519 Pfam Zinc-finger containing family 7 63 IPR041686 -
Vimu7g01003 519 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Vimu7g01003 519 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 518 - -
Vimu7g01003 519 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Vimu7g01003 519 MobiDBLite consensus disorder prediction 120 154 - -
Vimu7g01003 519 Pfam RNA-binding, Nab2-type zinc finger 88 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01003 Vimu-Chr7 9829486 9831763 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu7g01003 zf-CCCH_3 1.5e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01003 - - gmx:100792282 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01003 7 9829486 9831763 Vimu7g01003 7 9829486 9831763 ECH