Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00998 ATGTCCATAAACGTTCACTCCCATGCCTTCGCCGGCAACCCTCTTCTCTCCAAATTCTCATTTTCAGGCCACCCCCTTCCACCCTCTTCAGCTCTTGAAGCCCTCAACGCGAAAATCGGGCTACCGAATACTCATTCGTATCCCTCCCTGAGCTTCAAGGTACTACCTTTCAGAAATGGGAGGCCCTTGGCTTCGTCCGAGGCCAGCTCCGGCGACTCGCCGCCGATTTGGCATCTGGGTTGGCTCGGCTTGGACGATCTCAGGGTTATTTTCGACAAGTCCGGTGCTCAGTTGAGTGTGGACTCGTTGGTGTATCTGAATTCGAGTGCAGAGGACGACGCCGTTTACTGGGCAATCGATGTTTCTGCTGAGGTAATTGAATTGGGTAGCAAAACGGGTTTGCGTTTTGTGGAGCTTCGGACGCTCATGGTGGCTACCGACTGGTCGGATTTGCAAGCAATGGGAAGCTTGGCTATTGCTGGTCATGCTAAGGCACTGCTAGAATGGCATAATGTATCACGATTTTGTGGACATTGTGGTGAGAAAACAGTCCCGATGGAAGCTGGACGAAGGAAGCAATGTTCTAATGGTTCATGCAAAAAGAGGATATACCCGCGTGTTGATCCGGTGGTCATTATGCTTGTAATTGATAGAGAGAATGACCGTGCTCTTTTGGCTAAGCGACCAATGCGTCTACATCGATTGTACACTTGCTTATCAGGTTTCATAGAGCCAGGAGAAAGCTTGGAGGAAGCTGTGAGAAGAGAAACATGGGAAGAGACTCGTGTTGAAGTGGGAGAAGTTGTATATCACAGTTCTCAACCGTGGCCTGGTGTTAGAGTGAAATTCAGAAGAGGCATTATTATATTTGGCAAATTTAGATACACTCAAGTTGAAGACGTGTGTTTTGCTGAAAATATTAGCATGATTGGTAATGTGATGTGTGGCTCTACTATCAGGATACCACAATGGATCATTAAGTGTGGAGGGTGGAAGCAACATTTGCTTGCACTATCTGCTGTTCTTGGAGGCGGTGTCTGTCAAATCTTTCTTCTTGGGCTAATAGAAGGGCTTCGATATCTTGAACGCTGTGAGGATCGATTTGAGGTCACAGACGTGACAAAACTGTGTTTGAGTGGTATAGTAGGTGTTCAGCCGATCCCGTATCTGAGAAGACGTATGAAGGTCCACCATCTTGAAATTATATTGTTTGCAACATCCATATCGTTGGAGAAGCGTGGAGGCGCACAAGAACCATCCAAGAAGTGCATAAGATTGAGTCCCGGTGGCAAGGACTTGTTGTTGCCAAATCAAGTAGTTGTCCTCATCCAATTTGAGATTGATAGGGGTATTGAAGGCGTGGGGAATAAAGGAAGAACGATCAATTTTGGACCAAGTGGCATTCCATGCCAGTTGATGGTTGGGTTCTTTGCATATGCAAAATCTCTTGAAATAACTGTGGACAAGAAAGAGTTAGAAGATGCTCAGTGGTACAGTAGAGAAGAAGTAAGAAAAGCATTGACGTCTGCTAAATACAAGGAAACCCAAAGAACTGCAGCAGAAAAGGTCGAACAGATATGTAAGGGACTAGAAGAGAACAGAAGCTTCGCTTCAGATTTCAACGTGGAAAGTGCTGGTGAAAATGCTCCAATAGTTTTTCCTGGACCCTTTGCAATAGCCCATCACCTTATTTCTTCTTGGGCATTCTCGGATTAA 1716 0.4592 MSINVHSHAFAGNPLLSKFSFSGHPLPPSSALEALNAKIGLPNTHSYPSLSFKVLPFRNGRPLASSEASSGDSPPIWHLGWLGLDDLRVIFDKSGAQLSVDSLVYLNSSAEDDAVYWAIDVSAEVIELGSKTGLRFVELRTLMVATDWSDLQAMGSLAIAGHAKALLEWHNVSRFCGHCGEKTVPMEAGRRKQCSNGSCKKRIYPRVDPVVIMLVIDRENDRALLAKRPMRLHRLYTCLSGFIEPGESLEEAVRRETWEETRVEVGEVVYHSSQPWPGVRVKFRRGIIIFGKFRYTQVEDVCFAENISMIGNVMCGSTIRIPQWIIKCGGWKQHLLALSAVLGGGVCQIFLLGLIEGLRYLERCEDRFEVTDVTKLCLSGIVGVQPIPYLRRRMKVHHLEIILFATSISLEKRGGAQEPSKKCIRLSPGGKDLLLPNQVVVLIQFEIDRGIEGVGNKGRTINFGPSGIPCQLMVGFFAYAKSLEITVDKKELEDAQWYSREEVRKALTSAKYKETQRTAAEKVEQICKGLEENRSFASDFNVESAGENAPIVFPGPFAIAHHLISSWAFSD 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00998 571 Coils Coil 513 533 - -
Vimu7g00998 571 SUPERFAMILY Nudix 465 517 IPR015797 -
Vimu7g00998 571 ProSiteProfiles Nudix hydrolase domain profile. 205 520 IPR000086 -
Vimu7g00998 571 ProSitePatterns Nudix box signature. 241 262 IPR020084 GO:0016787
Vimu7g00998 571 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 449 529 - -
Vimu7g00998 571 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 206 308 - -
Vimu7g00998 571 Pfam NUDIX domain 210 273 IPR000086 -
Vimu7g00998 571 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 54 169 IPR015375 GO:0016787
Vimu7g00998 571 SUPERFAMILY Nudix 157 279 IPR015797 -
Vimu7g00998 571 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 464 569 - -
Vimu7g00998 571 CDD NADH_pyrophosphatase 209 277 - -
Vimu7g00998 571 Gene3D - 82 205 - -
Vimu7g00998 571 Pfam NADH pyrophosphatase zinc ribbon domain 173 204 IPR015376 GO:0016787|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00998 Vimu-Chr7 9802590 9810730 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00998 K03426 - gmx:100793335 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00998 7 9802590 9810730 Vimu7g00998 7 9802590 9810730 ECH
Vimu7g00998 7 9802590 9810730 Vimu10g00893 10 7958197 7968674 PCT