Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00997 ATGAGTTTCTCTGACCACATTCCATCTTTTATGATGTCACCGCCGTCATTTTCGACAGACACAGATGCCATTGAAGTGAGGCTTCAATTTCCAATGAACAACGATTCATTGGAGCAACATTCACAGCAGGATCAACCCCCTTCGATCAAGAGGGCAAGAATTGGTGATAACAACCACTCCTATCCAATGGCATGCACTCCAAGGATGATTCAGAACCCCAATTTTAATAAGGGAACCAGCCACATTTTCTTCAAGACTCGCATGTGTGCAAAATTCAGAGTTGGGGCTTGTAGGAACGGTGAGAATTGCAACTTTGCACATGGAGTTGAGGACATGAGGCAGCCACCCCCGAACTGGCAAGAGCTTGTTGGATTACGCAATGAGGAGCGGCTACCCTCCGGGAATTGGGATGATGACCAGAAAATTATACAGAAGATGAAGCTGTGCAAGAAGTATTATAATGGGGATGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAAGTTCAGGGATGATTCGGGGAGGTACAGAGAGAGCACAGCTATAAATATCGGAACTAATGGATCTCCCAAGGCATATGGTGATCCTTCAAATTGTTTAGAGAGTAATAAGGTTGTCAACACTGGCTTAAATGTTTCCCGGTCGAATGTTAAGTCCACCTATTGGAAGACTAAATTGTGCATCAAATTTGAGACAACAGGGCACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGCTACAATTTCCTGGTGGACGCAATGAGGCAGAAACTGCAGGCGCCGCTCCAGTTTCAAATAAAGCTACCATTCCAACCTTACCAAGAGCTACACCAGTTCCTTCTAATGATGCTCCTCCAAGCCAGAGAGTTAGTGTACCTCCTGCAAATGAAGAGGAGGGCAAGAAACATTTACTGAAGTGGAAGGGACCCAAGAAAATCAACCGAATTTATGGTGATTGGCTTGATGACTTACCACTTGGTCACAACTTGCCAGGTAGAGTTGGAATCTGA 1038 0.4538 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNDSLEQHSQQDQPPSIKRARIGDNNHSYPMACTPRMIQNPNFNKGTSHIFFKTRMCAKFRVGACRNGENCNFAHGVEDMRQPPPNWQELVGLRNEERLPSGNWDDDQKIIQKMKLCKKYYNGDECPYGDKCSFLHEDPAKFRDDSGRYRESTAINIGTNGSPKAYGDPSNCLESNKVVNTGLNVSRSNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQFPGGRNEAETAGAAPVSNKATIPTLPRATPVPSNDAPPSQRVSVPPANEEEGKKHLLKWKGPKKINRIYGDWLDDLPLGHNLPGRVGI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00997 345 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Vimu7g00997 345 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Vimu7g00997 345 FunFam Zinc finger CCCH domain-containing protein 39 140 172 - -
Vimu7g00997 345 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Vimu7g00997 345 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Vimu7g00997 345 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Vimu7g00997 345 Gene3D - 77 114 - -
Vimu7g00997 345 Gene3D - 219 258 - -
Vimu7g00997 345 Gene3D - 143 172 - -
Vimu7g00997 345 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Vimu7g00997 345 MobiDBLite consensus disorder prediction 263 310 - -
Vimu7g00997 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Vimu7g00997 345 PANTHER CCCH ZINC FINGER/TIS11-RELATED 32 173 IPR045877 GO:0003729
Vimu7g00997 345 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Vimu7g00997 345 Pfam CCCH-type zinc finger 147 168 IPR041367 -
Vimu7g00997 345 Pfam CCCH-type zinc finger 87 108 IPR041367 -
Vimu7g00997 345 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
Vimu7g00997 345 FunFam Zinc finger CCCH domain-containing protein 221 258 - -
Vimu7g00997 345 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Vimu7g00997 345 FunFam Zinc finger CCCH domain-containing protein 78 114 - -
Vimu7g00997 345 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00997 Vimu-Chr7 9799130 9801123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00997 228 257 C3H Transcription Factor Family AT1G68200 60.000 5.78e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu7g00997 zf-CCCH 9.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00997 - - gmx:100793865 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00997 7 9799130 9801123 Vimu7g00997 7 9799130 9801123 ECH