Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00990 ATGAATGCTCCCACCACCGTAACCGCCATCACCACCACACCGCCCAGTAGGGATGAACCCGACTACGACAGCAGCTCCTCCTCCATCACCCTGCCGGAATCCACCCGGAGCTGGATGACCAACCTCAGCTTCGGCAGCCGCCGCCGCCGGAGCTCCGTCTCCGTGTGCTCCTCCACCCTGGAGAGTCCGCACGCCAGGCCCCACAAGGCCAACCAGGCTGCATGGGAGGTCATGCGGCGGCTCCGGCACGACAAGGGGCAGGTCGGTCTGGAGCACTTCCGCCTGATGCGGCGGCTCGGGAGCGGCGACATCGGGAACGTGTACCTTTGCCAGATAAGGAACCCCGTGGTGGGGTTGCCGCAGTGCTTTTATGCGATGAAGGTGGTGGACAGAGAGGCACTTGCGATAAGGAAGAAGCTGCAGAGGGCGGAGATGGAGAAGGAGATTCTCGCCATGCTTGATCACCCCTTCTTGCCTACTTTGTACACTGAGTTTGACGCTTCTCATTACTCTTGCTTGGTCATGGAGTTCTGCCCCGGTGGCGACTTGTACGCTGCACGCCAACGCCAGCCCGGGAAGCGCTTTTCTATTACATCCACTAAGTTTTATTCGGCTGAGACGCTATTGGCATTAGAGTATCTTCACATGATGGGCATAGTGTACAGGGATTTGAAGCCAGAGAACGTGCTTGTGAGAGAGGATGGACACATTATGCTTTCAGATTTTGATCTTTCACTCAAATGTGACGTTGTGCCGAAGCTGTTAAGGAGTAAGACGAGAGTGGAACGCAGTATCAAGAGTACAAAGAGATCTGTGCCAGCCTGCACTGCCCCCATGCAGCCTGTGCTGTCATGTTTCTTGGCATCAAGCAAGAAGAAGAAAGCAACAGTAACAACAGTTATAAGAGAAAATGTTGAGGTGGAAGAGCTTGATCCGGAGCTGGTGGCTGAGCCTATTGATGCGAAGTCGAAGTCGTTTGTGGGGACACACGAGTACTTGGCACCCGAAGTGATCTTGGGGCAAGGACATGGGAGTGCAGTGGACTGGTGGACGTTTGGGGTGTTCTTGTATGAGATGTTATACGGGAGAACACCCTTCAAAGGTGAAAATAATGAAAAAACTCTTGTCAACATTTTGAAGCAACCATTGGCTTTCCCCAGAATCGCAGTTAGCAGCAGCAAGGATTATGAAGAGGTGGTGAAAGTTCAAGACCTTATAAGCAAGCTCTTGGTGAAGAATCCAAATAAGAGAATTGGAAGCTGTATGGGTTCTGTTGAGATCAAAAGGCATGAGTTCTTCAAGGGTGTAAATTGGGCCTTGATTAGATCAGTTAGGCCACCTGAAATCCCCAGTGATATGAACAAAATTAGGAGTAGTAGGGTTTTGCTACCAAAACTAAGCAAAACAGACAGGGATCAGCCATATCAGCTTAGAACTCATCATTTTGAATACTTCTAA 1458 0.5103 MNAPTTVTAITTTPPSRDEPDYDSSSSSITLPESTRSWMTNLSFGSRRRRSSVSVCSSTLESPHARPHKANQAAWEVMRRLRHDKGQVGLEHFRLMRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGKRFSITSTKFYSAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRVERSIKSTKRSVPACTAPMQPVLSCFLASSKKKKATVTTVIRENVEVEELDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIAVSSSKDYEEVVKVQDLISKLLVKNPNKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEIPSDMNKIRSSRVLLPKLSKTDRDQPYQLRTHHFEYF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00990 485 FunFam serine/threonine-protein kinase D6PK-like 321 451 - -
Vimu7g00990 485 Gene3D Transferase(Phosphotransferase) domain 1 320 451 - -
Vimu7g00990 485 CDD STKc_phototropin_like 92 450 - -
Vimu7g00990 485 SUPERFAMILY Protein kinase-like (PK-like) 74 454 IPR011009 -
Vimu7g00990 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vimu7g00990 485 ProSiteProfiles Protein kinase domain profile. 93 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00990 485 FunFam protein kinase PINOID 178 246 - -
Vimu7g00990 485 FunFam protein kinase PINOID 2 91 177 - -
Vimu7g00990 485 Gene3D Phosphorylase Kinase; domain 1 91 177 - -
Vimu7g00990 485 PANTHER FLIPPASE KINASE 1-RELATED 46 454 - -
Vimu7g00990 485 Pfam Protein kinase domain 322 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00990 485 Pfam Protein kinase domain 94 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00990 485 Coils Coil 126 146 - -
Vimu7g00990 485 Gene3D Transferase(Phosphotransferase) domain 1 178 247 - -
Vimu7g00990 485 SMART serkin_6 93 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00990 485 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00990 Vimu-Chr7 9738647 9740474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00990 18 485 AGC Kinase Gene Family AT2G26700 57.714 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu7g00990 Pkinase 3.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00990 K08286 - gmx:100777988 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00990 7 9738647 9740474 Vimu7g00990 7 9738647 9740474 ECH
Vimu7g00990 7 9738647 9740474 Vimu10g00872 10 7743870 7745891 PCT