Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00977 ATGCTTCGCCTATGGCGTCTTCGGAGAGTCAGTGCTTTGTTTTCTCGGCTTGAGAAGGACAGAAACTATAACTATTTTTGGGTTCGCTGTGCCAAGCTTATTTCTGTTACCCTCTTCGCTGTTCATTGTGCTGGGTGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCAAAAAAGACGTGGATTGGATCAACTATGGATAATTTCCTTGAACAAAGTTTGTGGTCAAGATACGTGATGTCTATTTACTGGTCTATTACTACCTTAACAACTGTCGGTTATGGAGATTTACATCCAGTGAATTCAAGGGAGATGACCTTTGACATTTTTTATATGCTATTTAATCTGGGGTTAACAGCGTATTTGATTGGTAATATGACCAATTTGGTTGTCCACGGCACAAGTCGAACCAGAAAATTTAGAGATACCATCCAAGCTGCCTCAAACTTTGCCCAAAGGAATCAATTGCCTCATCGGTTGCAAGACCAAATGCTTGCCCACTTGTGTTTGAAGTATAGAACAGACTCGGAAGGGTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAGGCCATCAGATCCAGCATTTCACATCATCTTTTCAGTTCTCTGATTGATAAGGTCTACTTGTTTAAGGAGGTTTCCAATGACTTGCTCTTTCAATTGGTTGTTGGAGAGGCCAAAACCGGTGATCTTTGTGGTGAGATTGGTGTCCTCTGTTACAAGCCACAGCTTTTCACTGTTCGAACGAAGCGACTAAGCCAGTTGCTGAGGCTAAATCGTACTACTTTCTTGAATATTGTTCAGGCCAACGTGGGAGACGGAACCATTATCATGAATAATCTGCTTCAGCATTTAAAAGAGCTCAACGATCCAATCATGGAGGGAGTTTTGGTGGAGATTGAGAACATGTTAGCTCGTGGTAGAATGGACCTACCAGTGAGTGTGTGCTTTGCGGCAGCAAGAGGTGATGACTTGTTGTTACATCAGTTGCTAAAACGGGGAATGGATCCAAACGAATCCGACAACAATCGAAGGACAGCTTTGATTTCGACGGCTATGGTGGGAGGACATGAGTCAGTGAGGAAGGTGTTGTCAGAAAATGGAGCTAACTTGCAATGCGGGGATGTGGGCCAGTTTGCATGTACCGCTGTTGAGCAGAACAGTTTGAAGTTGCTGAAGGAAATAAGGCGCTACGGAGGAGATATCACCCTTCCAAGCATCAACAGTGGGACCACAGCATTGCACGTTGCAGTGTCGGAGGGCAACGTTGAAATTGTGAAATACCTTTTGGATCACGGGGCAAGCATTGACAAGCCGGACAAGAATGGCTGGACCGCCAGAGGTCTGGCAGATCAGCAATCACATACAGAAATAAAAGCCATTTTTGACTCCACTGGGGACCCTAAGATTCAGTCTTTCGTTACCATTCCCGAGAAGCAGAGTGGGTTCAGGTTCCTTGGAAGGTTTACTAGTGAGCCAACCATGCCTTCACCCCCTGACGGCTCATTTCATGGAACGGATGCCTCTTGGAGCCAGAGCCAGAACCGTCCAAGGCGTAGGAGCAGCAATTATCAGAATTCACTCTTAGGGATGATGGTAGCAGCACATAATGGGGAAAAGGACCTGCTTTTGCCTCTTGACATGAATAACAAGGCAAGCAATGGCATGAAGAATGGTAATGCAGGTAGTCCAGCTAGAGTTATTATTAGTTGCCCTGAGAAGGGTGAAGTTGTGGGGAAGCTTGTTTTACTACCTGGAAGCTTTCAAGAGCTGCTTGAGATTGGAGCCAAAAAATTTGGTTTCTATCCTGCCAAGGTTTTATGCAAAGATGGAGGTCAAATTGAAGATTTAGAGGTTATTAGAGATGGTGACCATCTGGTCTTTCACGATGATGGTGGGCTGTAG 1911 0.4479 MLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLISVTLFAVHCAGCFYYLIAARYHDPKKTWIGSTMDNFLEQSLWSRYVMSIYWSITTLTTVGYGDLHPVNSREMTFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHHLFSSLIDKVYLFKEVSNDLLFQLVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVEIENMLARGRMDLPVSVCFAAARGDDLLLHQLLKRGMDPNESDNNRRTALISTAMVGGHESVRKVLSENGANLQCGDVGQFACTAVEQNSLKLLKEIRRYGGDITLPSINSGTTALHVAVSEGNVEIVKYLLDHGASIDKPDKNGWTARGLADQQSHTEIKAIFDSTGDPKIQSFVTIPEKQSGFRFLGRFTSEPTMPSPPDGSFHGTDASWSQSQNRPRRRSSNYQNSLLGMMVAAHNGEKDLLLPLDMNNKASNGMKNGNAGSPARVIISCPEKGEVVGKLVLLPGSFQELLEIGAKKFGFYPAKVLCKDGGQIEDLEVIRDGDHLVFHDDGGL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00977 636 PANTHER POTASSIUM CHANNEL AKT1 1 225 IPR045319 GO:0005249|GO:0006813
Vimu7g00977 636 SUPERFAMILY Voltage-gated potassium channels 2 169 - -
Vimu7g00977 636 CDD CAP_ED 186 272 IPR000595 -
Vimu7g00977 636 Gene3D - 1 132 - -
Vimu7g00977 636 Gene3D - 314 465 IPR036770 -
Vimu7g00977 636 ProSiteProfiles cAMP/cGMP binding motif profile. 207 269 IPR000595 -
Vimu7g00977 636 ProSiteProfiles Ankyrin repeat profile. 411 443 IPR002110 GO:0005515
Vimu7g00977 636 MobiDBLite consensus disorder prediction 490 523 - -
Vimu7g00977 636 ProSiteProfiles KHA domain profile. 568 636 IPR021789 -
Vimu7g00977 636 Pfam KHA, dimerisation domain of potassium ion channel 568 630 IPR021789 -
Vimu7g00977 636 Gene3D Jelly Rolls 206 302 IPR014710 -
Vimu7g00977 636 ProSiteProfiles Ankyrin repeat region circular profile. 411 443 - -
Vimu7g00977 636 Pfam Ankyrin repeats (3 copies) 385 449 IPR002110 GO:0005515
Vimu7g00977 636 Pfam Ion transport protein 1 138 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu7g00977 636 PRINTS EAG/ELK/ERG potassium channel family signature 105 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu7g00977 636 PRINTS EAG/ELK/ERG potassium channel family signature 123 132 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu7g00977 636 PRINTS EAG/ELK/ERG potassium channel family signature 79 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu7g00977 636 MobiDBLite consensus disorder prediction 506 523 - -
Vimu7g00977 636 SUPERFAMILY cAMP-binding domain-like 136 287 IPR018490 -
Vimu7g00977 636 SUPERFAMILY Ankyrin repeat 319 464 IPR036770 -
Vimu7g00977 636 SMART ANK_2a 411 440 IPR002110 GO:0005515
Vimu7g00977 636 SMART ANK_2a 312 341 IPR002110 GO:0005515
Vimu7g00977 636 SMART ANK_2a 345 375 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00977 Vimu-Chr7 9568559 9574924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00977 1 633 Ion Channels AT2G26650 60.924 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00977 K21867 - gmx:100781642 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00977 7 9568559 9574924 Vimu7g00977 7 9568559 9574924 ECH