Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00974 ATGGACAAGAAAAAGGTAGCAGTTCCCCTCGTGTGCCACGGCCACTCGCGCCCGGTGGTCGATCTCTTCTACAGTCCTGTTACGCCTGATGGGTTTTTCCTCATCAGTGCAAGCAAGGATTCCAGCCCTATGCTCAGAAATGGAGAGACTGGGGACTGGATTGGAACATTTGAAGGGCACAAAGGTGCTGTGTGGAGTTGCTGCTTGGATACTAATGCCTTGCGTGCTGCAACTGCTTCTGCTGATTTCTCAACCAGAAAAGTTTGGGATGCTTTAACAGGAGACGAATTGCACTCATTTGAGCACAAGCACATTGTTCGAGCATGTGCCTTTTCAGAGGATACTCACCTTTTGCTCACTGGGGGAGTGGAAAAAATTCTCCGCATCTATGATATGAATCGGCCTGATGCACCACCCAGAGAAGTGGATAAATCCCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACCGATATGGGAGGAGTCAGGTATATTGTTCATTGGTTTTTGATGCTGAAATTGATGTTTCACAGGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTTGAAACCAAGTCATCTGTGACAAGTGCTGAAGTGAGTCAGGATGGCCGTTATATTACGACTGCTGATGGTTCTACTAGCTATGATATGCCCTGCACCGTGGAATCAGTTTCACTGGAGCCTAAGTTTGGGAACAAGTTCGTTGCAGGAGGAGAAGATATGTGGGTTCATGTTTTTGATTTCCATACAGGCAATGAGATTGCATGCAACAAGGGGCACCATGGTCCTGTCCATTGTGTTCGTTTTTCTCCTGGTGGAGAATCCTATGCCTCTGGATCTGAGGATGGAACCATCAGAATATGGCAGACTGGCCCATTGACTCTCGATGATTCGGAGGCCTTGTCTGCAAATGGATCAATTGATAAGGTGAAGGTAGCTGCAGATGAGGTTTCACGCAAGATTGAGGGTTTTCATATTGCCGATGAGGGGAAATCTAAAGCTAAGGATGAGGATGTGGAGGAATCAAGCTAG 1068 0.4663 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTRKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRYIVHWFLMLKLMFHRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSTSYDMPCTVESVSLEPKFGNKFVAGGEDMWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTLDDSEALSANGSIDKVKVAADEVSRKIEGFHIADEGKSKAKDEDVEESS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00974 355 Gene3D - 185 227 IPR015943 GO:0005515
Vimu7g00974 355 Gene3D - 9 176 IPR015943 GO:0005515
Vimu7g00974 355 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Vimu7g00974 355 Pfam WD domain, G-beta repeat 95 131 IPR001680 GO:0005515
Vimu7g00974 355 Pfam WD domain, G-beta repeat 268 300 IPR001680 GO:0005515
Vimu7g00974 355 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 344 - -
Vimu7g00974 355 SMART WD40_4 135 178 IPR001680 GO:0005515
Vimu7g00974 355 SMART WD40_4 93 131 IPR001680 GO:0005515
Vimu7g00974 355 SMART WD40_4 193 259 IPR001680 GO:0005515
Vimu7g00974 355 SMART WD40_4 262 301 IPR001680 GO:0005515
Vimu7g00974 355 SMART WD40_4 50 90 IPR001680 GO:0005515
Vimu7g00974 355 SMART WD40_4 5 47 IPR001680 GO:0005515
Vimu7g00974 355 Gene3D - 230 328 IPR015943 GO:0005515
Vimu7g00974 355 SUPERFAMILY WD40 repeat-like 5 301 IPR036322 GO:0005515
Vimu7g00974 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 301 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00974 9 299 Eukaryotic Initiation Factors Gene Family AT2G46290 26.023 3.52e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00974 K13137 - gmx:100818422 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00974 7 9531320 9535176 Vimu7g00974 7 9531320 9535176 ECH