Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00970 GCTTATGGAACATTACATTTTTTTAAGGAAAGTGGAGATGGTGCTGATGTTGCTGTTGTGGACTTGAGTGCAAATTTCTTTCCTTATTTTCTTCAGAACTATTTGCCAAGTTCAATGAAGGATCCAGCGGAGGATCAAGTGAAATCTAGGAGGGCCCTCCAGAGATCAAAAGACCTCAGAAGAAGAGATAGAAGAAGAAGCCAATGCAAACAAGATAAATTACAAGAAACAGGACTTGACTCGCAATTGGTTTCCTCTGCTTGCAAAAGTCTTGTGTTTCCTGCCAGACCTGGCTATGGCCAGCTGGGGACAAAGTGTCTGGTCAAAGCTAATCATTTCCTGGCAGATATATCAGCTTCTGACTTGAGCCATTACAATGTTACAATAACACCTGAAGTCACTTCTCGTAAAACAAGCAAAGCCATCATATCTGAGTTGGTGAGGCTTCACAGGAACACTGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGAAATCTCTACACTGCTGGCTTGCTTCCATTTGCATACAAAGAGTTCTCCATAACATTGAGCCGGGATGACGAGGGTACTGGTGGTACCAGGGAAAGAGAATTTGAAGTGGTGATAAAGTTTGCAGCTCGTGTCAGCATGCATCAATTACGTGAGCTTCTGAGTGGGAAGCAAGTGGACACCCCACAAGAGGCGCTTACTGTCATTGACATTGTATTGAGGGAGCTTGCAGCTCAGAGCTTCGTGTCAGTTGGGAGGTTTCTCTATTCTCCGGATTTAAGAAAACCACAGCAGTTAGGTGGTGGTCTGGAATCATGGCGCGGCTTCTACCAAAGTATAAGGCCTACTCAGATGGGATTGTCCCTTAATATTGACATGTCATCAATGGCTTTTATTGAACCACTCCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGACGTGCTCTCAAAGCCACTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTCGAAGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGAATTACAGGATTGACATCACAACCTACAAGGGAGCTCAATTTCCCTGTCGATGAGAAAATGAACATGAAATCAGTGGTTGATTACTTTCAAGAAATGTATGGATATACAATTATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGTCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGTAAGATAGTTGGAGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGTTGAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGACATTCTACAGACAATTCAAGAAAATAATTATGAGTATAATCCCTATGTAAAGGAGTTTGGTATCAGCATTGACAGCAAACTTGCATCAGTTGAAGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAACACTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACTGTAAGATATTGGGCATGTATCAATTTCTCACGAAGTATCCAAGAAATTGCTCGCGGGTTTTGCCAACAGTTGGTTCAGATGTGCCAAATCTCAGGCATGGAATTTAGTCTAGACCCTGTGATTCCTATATACACAGCAAGGCCTGATATGGTAAAGAAAGCCTTGAAGTACGTACATTCTGCTGTGCGAGATAAACTTGGTGGGAAAGAACTAGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGTAAGATTCCAAGTCACTCCAATATGTCCAGTCATCGGCATCAGTTCATGAACATAGCTACCATGGTAGAGGTGTATATAGAAATGCTAACAGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTTCAAAACACGTGTTCAAGATCAATAGACAGTATCTGGCAAATGTGGCCTTAAAGATCAACGTCAAGTTGGGAGGAAGGAACACGGTACTTTTGGATGCCTTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCGACAATAATTTTCGGAGCTGATGTGACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTATGCAGGATTAGTATGTACTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTTGGAAGGATCCTCATCATGGTGTAGTTTATGGTGGCATGATCAGAGAGCTGTTACTCTCGTTTAAGAAGGCAACTGGACAAAAACCACTGAGAATAATATTTTACAGGGATGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGTTGTACGAGCTTGATGCTATTCGTAAGGCTTGTGCATCTTTGGAACCGAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAGAAACGGCATCACACCAGACTTTTCTCAAACAATCATGACGACAGAAACAGCACTGATAAGAGTGGGAATATCTTACCTGGTACCGTGGTGGATTCTAAGATCTGTCATCCGACGGAATTCGATTTCTATTTATGCAGTCATGCGGGAATTCAGGGTACAAGTAGACCAGCCCATTATCATGTTCTGTGGGACGAGAACAATTTCAGTGCTGATGAGATTCAATCTCTGACCAACAACTTGTGCTACACATATGCAAGATGTACACGATCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCACTTGGCAGCATACAGAGCTCGTTTCTACATGGAACCAGATGTTCATGAGATTGGTAAATCTCGAGGTGGTAGATCAAAAGATGAGTCAGTTCGGCCACTACCAGCTCTGAAAGAGAAGGTGAAGAATGTGATGTTTTACTGTTGA 2928 0.4276 AYGTLHFFKESGDGADVAVVDLSANFFPYFLQNYLPSSMKDPAEDQVKSRRALQRSKDLRRRDRRRSQCKQDKLQETGLDSQLVSSACKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYNVTITPEVTSRKTSKAIISELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFAYKEFSITLSRDDEGTGGTREREFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSFVSVGRFLYSPDLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQENNYEYNPYVKEFGISIDSKLASVEARVLPAPWLKYHDTGREKEHLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQEIARGFCQQLVQMCQISGMEFSLDPVIPIYTARPDMVKKALKYVHSAVRDKLGGKELELLIAILPDNNGSLYGKIPSHSNMSSHRHQFMNIATMVEVYIEMLTGDLKRICETDLGLISQCCLSKHVFKINRQYLANVALKINVKLGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCTQPHREELIQDLFKCWKDPHHGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHEIGKSRGGRSKDESVRPLPALKEKVKNVMFYC 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00970 975 Pfam Piwi domain 631 938 IPR003165 GO:0003676
Vimu7g00970 975 Pfam N-terminal domain of argonaute 105 238 IPR032474 -
Vimu7g00970 975 Pfam Argonaute linker 1 domain 248 297 IPR014811 -
Vimu7g00970 975 CDD Piwi_ago-like 458 938 IPR045246 -
Vimu7g00970 975 FunFam Protein argonaute-2 293 419 - -
Vimu7g00970 975 Gene3D paz domain 294 418 - -
Vimu7g00970 975 Gene3D - 478 681 - -
Vimu7g00970 975 SUPERFAMILY Ribonuclease H-like 579 940 IPR012337 -
Vimu7g00970 975 Gene3D - 687 975 IPR036397 GO:0003676
Vimu7g00970 975 MobiDBLite consensus disorder prediction 40 72 - -
Vimu7g00970 975 SMART DUF1785_2 247 299 IPR014811 -
Vimu7g00970 975 SMART Piwi_a_2 618 939 IPR003165 GO:0003676
Vimu7g00970 975 CDD PAZ_argonaute_like 299 413 - -
Vimu7g00970 975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 87 939 - -
Vimu7g00970 975 ProSiteProfiles PAZ domain profile. 300 414 IPR003100 GO:0005515
Vimu7g00970 975 Pfam Argonaute linker 2 domain 442 486 IPR032472 -
Vimu7g00970 975 SUPERFAMILY PAZ domain 295 454 IPR036085 GO:0005515
Vimu7g00970 975 FunFam protein argonaute 10-like 687 975 - -
Vimu7g00970 975 Pfam PAZ domain 325 430 IPR003100 GO:0005515
Vimu7g00970 975 Pfam Mid domain of argonaute 497 573 IPR032473 -
Vimu7g00970 975 SMART PAZ_2_a_3 304 436 IPR003100 GO:0005515
Vimu7g00970 975 ProSiteProfiles Piwi domain profile. 618 939 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00970 Vimu-Chr7 9474715 9481504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00970 78 975 Eukaryotic Initiation Factors Gene Family AT5G43810 71.334 0.0 1375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00970 K11593 - gmx:100808457 1704.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00970 7 9474715 9481504 Vimu7g00970 7 9474715 9481504 ECH