Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00969 ATGACGATGGACGACGATAGCTCTATATATGTTGGGGGTCTCCCTTACGACATCACCGACGAAACCATTCGCACTGTCTTCAATTTGTATGGTGCCATTCTCGATGTGAAGATTATCAACGACCAACGCGGTAGGGGGAAGTGCTACTGTTTTGTTACTTTCACGAATCCTAGGTCAGCGATCGACGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGGTTAAAGTTAATGGGGTGAGGTCTCGTGGGGGCAGGTCAAACTTTGGCAGAGAACGGTATTACTATCATAATGATGAGAGGAATGGAGATTGGGATCGTGGGAGAGATCGAGACAGAGATTATGATCATGATAATAGTGGTAGGGATGGATACAGGAATCGGAACAATGATTGGAGTCGGGACCGTGATAGGTCTCGAGACCGAGACCAGGATAGGGATAGAAGATTTGAGCATATGCATGACTATGATGAAGATAGAGATCCTCTGTTAGATAATGACTGGGGTAGAGAGGATGATAGAGTTGAAAATGATCAAGAAAATAGCAGGGGGGATGGTGGAGATGTGGATAGAGACCACAACTTGGATTTTAATGCAGACAGGAAAACGGATAGGACAAGTGACCCTGATAGAAGTTTTGACGAGGATAGAAAAGATCAGTCAAGGAGAAACAATGACTTGAATGTTACAAATCAACATAGCATGGATCTTTCATCAGAATCAACTGGTGCAGATGATGATCAGGTAGAAGCTCAATTAGAGAGCTCAACTAAGCAGCTTGATCAACTCAAAAAAGAGGTTTCTCAAATGGAAGAGGGATTGGAAGAGAAAAGGGTCCATGTTAAGGAATTGCAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCAAAGAAAAACACTTCATATCGTCAGATGCAGTTGATAAAGCTTCATAAATGTTTTCTGCAAGTGAAAGATTACACAGAAAGACTTAAAACTAGTGAAAAGGAACTTCAGGCTCTAATTGATACAGTACTGTTAGAGATTGATGGTGATGGCGTTGGATTCAAGGATGGACAACTAACAAATGGAAGTCTTGATGCTAGATAG 1101 0.4233 MTMDDDSSIYVGGLPYDITDETIRTVFNLYGAILDVKIINDQRGRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRSRGGRSNFGRERYYYHNDERNGDWDRGRDRDRDYDHDNSGRDGYRNRNNDWSRDRDRSRDRDQDRDRRFEHMHDYDEDRDPLLDNDWGREDDRVENDQENSRGDGGDVDRDHNLDFNADRKTDRTSDPDRSFDEDRKDQSRRNNDLNVTNQHSMDLSSESTGADDDQVEAQLESSTKQLDQLKKEVSQMEEGLEEKRVHVKELQKQSKKLEDALINAKKNTSYRQMQLIKLHKCFLQVKDYTERLKTSEKELQALIDTVLLEIDGDGVGFKDGQLTNGSLDAR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00969 366 SMART rrm1_1 8 80 IPR000504 GO:0003723
Vimu7g00969 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Vimu7g00969 366 CDD RRM_SF 9 80 - -
Vimu7g00969 366 Gene3D - 2 97 IPR012677 -
Vimu7g00969 366 Coils Coil 248 303 - -
Vimu7g00969 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vimu7g00969 366 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Vimu7g00969 366 PANTHER GEO13361P1-RELATED 6 188 - -
Vimu7g00969 366 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 195 - -
Vimu7g00969 366 MobiDBLite consensus disorder prediction 108 253 - -
Vimu7g00969 366 MobiDBLite consensus disorder prediction 108 226 - -
Vimu7g00969 366 MobiDBLite consensus disorder prediction 227 253 - -
Vimu7g00969 366 Coils Coil 321 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00969 Vimu-Chr7 9459093 9462592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00969 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 3.63e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00969 - - vun:114179118 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00969 7 9459093 9462592 Vimu7g00969 7 9459093 9462592 ECH