Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00963 ATGTCTCATTTCAACTGGGAAGCTGATAAAATGTTAGATTTATATATCCACGATTATCTTAAGAAGAGACAATTGCATGCTACTGCAAGAGTATTCAAGGCCGAAGCAAATGTTTCAACCGATCCTGTTGTTATAGAAGCACCTTGTGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACGTATATATTTCCAGGACAAATATTGCCAGGACAAATCGGAAGCACACAGAAGCAGCAGCATCTTGCAGTAAGAATCAACAAATTAAAGCTCGAGTAATGCAGAGTCAACAAGAACAAGAGTTTCAGAATATAAACCAGAATCAACTAGCACAAATGAAACTCTTGATGGAAAGACGTGCTCAGGAGCTGCAGCAACGTCAGGGTGGAAATCAATTTATTAGGGGAAGTGCTAGCTGTCCTATTAGCAATGATCCTTTAATGAGGCAGAACCAGACAGCTCCTAATGCTATGGCAACAAAGTTATACAATGACAGGTTGAAGCTTCCATGTCAGAGAGATGTTTTAGAAGACGCAAACATTACGCAAAAGGTAGCTGATGACATTGGTAAGCTTTTAAACCCAAACCATTCAGTATTGTTGAAAGCGGCTGGGACATCTGGTGAAATGGCTTCAGGGCAAACATTGCTCAATTCTCCTCCTGGCATTTTACCGGGGAACCTTCCATATCTGAACCAGAAGCTTCCAGGGTCTACGCAAGACGTAAAGAGTGAGATGAATGCATTGGAGGGGTCTCAAGATGATATTTCAGAAGGATCCTTTATTGGTTGTATTGGATCTAATCCAGGTGCTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGGCTAGATGAGCTTCGTTCTGGCATTCTCCAGCATAATAGTTTGATGCACTCTGCACAATCTTTAAACCAATTTTCTCTACGGCAACAACTTATGCTTCAGGCACAACAAAATTTGATTTCACCTTCTGTCATTGATATGGAGAGAAGAAGACTTGATAAGCTTTTTAATGATCGGAATATGAGTCTTGTGAAAGATGGCCAGTCAAATTCCGTAGATGATTTGGTTCCCAGTAATGGATCACCTTCACAAGTTGGTTCCCCAATGTTGCCCCATCCAGACTCAGATGTGTTCTTTAAGCAACAAATTCAAAATAGTAGCCAGCAGCTTCAACAATATTCTCAACATCCTCTTCCTGGCCAACAGTCTGAGAATCTCCAGCAGCAGCAAGAAAAAATTGGTCCTGGTCCTGGAAGCATGACTGTGGAGGGAAATGTGTCCAATTCCTTACAAGGAAACGATCAGGCTCCAAAAAGTAAACTAGTGCGAAAGCGAAAGGCAGCATTGTCTTCAGGTCCTGGTAATAGCTCTGGAACTGCAAACACCACTGGACCACCTGCCAGTTCACCTTCAACACCACAAACACCTGGAGAGATGATAACAGTGTCAACTCTGCAACAGAATGCTCCTTCCTCTAAGTCATCACAAAATCAATTGGATGATATGGATCATCTTGTGGGTGATGGATGTTTGGGTGACAATATTGAGCCATTCGTATCTCCTGATGACAATGACACCAGAGAAAAAGTTGGTAAAGGATTAATTTTCAAGGAGATCAAGCATATAATGGCAGGTTCACATAAAGTTGAGTGTTGTCACTTCTCCTCAGATGGAAAACTTCTTGCTACTGGTGGCCATGATAACAAGGTTTCTCTGTGGTGCACCGAATTGTTTAACCAGAAATCTACTTTTGAAGAGCACAGCGAATGGATAACTGATGTTCGATTTTGCCCAAGCATGCTTCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATATTGATAATCCAAGTTATTCTCTTCGAACATTCACTGGACATGCTTCGACTGTGACGTCGCTAGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCATGTGACAATAGTGAGATAAGATACTGGAGCATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAAATGAGATTTCAACCTTGTTTGGGAAGGCTTCTTGCAGCTGCCGTTGATGATGTTGTATCCATTTTTGATGTAGAAACCCTGGGTTGCAGACTTAAATTACAGGGCCATAATGATGTTGTGCGTTCTGTGTGCTGGGATTTTTCTGGAAAATATGTGGCTTCTCTGAGTGATGATATGGTTAGAGTATGGAATGTTGGAATTGGCAGCAAAGGGGAAAGCATTCACGAGTTGGCTGCATCGGGGAACAAATTCAACACCTGTGTTTTCCATCCCATCTATCCTTGGTTGGTTATTGGCTGCCACAAGACTATTGATGTGTGGGACTTCGGTGAGAACAAGACATTGACCATGCATGCACACGAAAAACTTGTATCTTCCTTGGCAATATCAAATGCTACTGGCTTGCTGGCTTCAACTAGTCATGACAAACATTTGAAGATCTGGAAGGGACCAGCTTTTTAG 2493 0.422 MSHFNWEADKMLDLYIHDYLKKRQLHATARVFKAEANVSTDPVVIEAPCGFLFEWWSVFWDVYISRTNIARTNRKHTEAAASCSKNQQIKARVMQSQQEQEFQNINQNQLAQMKLLMERRAQELQQRQGGNQFIRGSASCPISNDPLMRQNQTAPNAMATKLYNDRLKLPCQRDVLEDANITQKVADDIGKLLNPNHSVLLKAAGTSGEMASGQTLLNSPPGILPGNLPYLNQKLPGSTQDVKSEMNALEGSQDDISEGSFIGCIGSNPGASNLTLKGWPLAGLDELRSGILQHNSLMHSAQSLNQFSLRQQLMLQAQQNLISPSVIDMERRRLDKLFNDRNMSLVKDGQSNSVDDLVPSNGSPSQVGSPMLPHPDSDVFFKQQIQNSSQQLQQYSQHPLPGQQSENLQQQQEKIGPGPGSMTVEGNVSNSLQGNDQAPKSKLVRKRKAALSSGPGNSSGTANTTGPPASSPSTPQTPGEMITVSTLQQNAPSSKSSQNQLDDMDHLVGDGCLGDNIEPFVSPDDNDTREKVGKGLIFKEIKHIMAGSHKVECCHFSSDGKLLATGGHDNKVSLWCTELFNQKSTFEEHSEWITDVRFCPSMLRVATSSADKTVRVWDIDNPSYSLRTFTGHASTVTSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGRLLAAAVDDVVSIFDVETLGCRLKLQGHNDVVRSVCWDFSGKYVASLSDDMVRVWNVGIGSKGESIHELAASGNKFNTCVFHPIYPWLVIGCHKTIDVWDFGENKTLTMHAHEKLVSSLAISNATGLLASTSHDKHLKIWKGPAF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00963 830 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 627 IPR001680 GO:0005515
Vimu7g00963 830 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 629 666 - -
Vimu7g00963 830 MobiDBLite consensus disorder prediction 345 370 - -
Vimu7g00963 830 SMART Lish 8 40 IPR006594 GO:0005515
Vimu7g00963 830 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 575 IPR001680 GO:0005515
Vimu7g00963 830 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vimu7g00963 830 PANTHER TRANSCRIPTION ACTIVATOR MSS11 87 826 - -
Vimu7g00963 830 ProSiteProfiles Trp-Asp (WD) repeats profile. 710 742 IPR001680 GO:0005515
Vimu7g00963 830 Gene3D - 676 829 IPR015943 GO:0005515
Vimu7g00963 830 Pfam LisH 10 36 IPR006594 GO:0005515
Vimu7g00963 830 Pfam WD domain, G-beta repeat 791 826 IPR001680 GO:0005515
Vimu7g00963 830 Pfam WD domain, G-beta repeat 583 618 IPR001680 GO:0005515
Vimu7g00963 830 Pfam WD domain, G-beta repeat 548 575 IPR001680 GO:0005515
Vimu7g00963 830 Pfam WD domain, G-beta repeat 626 661 IPR001680 GO:0005515
Vimu7g00963 830 Pfam WD domain, G-beta repeat 706 741 IPR001680 GO:0005515
Vimu7g00963 830 ProSiteProfiles Trp-Asp (WD) repeats profile. 794 826 IPR001680 GO:0005515
Vimu7g00963 830 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 670 IPR001680 GO:0005515
Vimu7g00963 830 CDD WD40 540 826 - -
Vimu7g00963 830 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Vimu7g00963 830 MobiDBLite consensus disorder prediction 345 480 - -
Vimu7g00963 830 MobiDBLite consensus disorder prediction 380 438 - -
Vimu7g00963 830 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 794 830 - -
Vimu7g00963 830 Coils Coil 107 127 - -
Vimu7g00963 830 Gene3D - 527 675 IPR015943 GO:0005515
Vimu7g00963 830 MobiDBLite consensus disorder prediction 452 480 - -
Vimu7g00963 830 SMART WD40_4 703 741 IPR001680 GO:0005515
Vimu7g00963 830 SMART WD40_4 579 618 IPR001680 GO:0005515
Vimu7g00963 830 SMART WD40_4 747 785 IPR001680 GO:0005515
Vimu7g00963 830 SMART WD40_4 537 576 IPR001680 GO:0005515
Vimu7g00963 830 SMART WD40_4 787 826 IPR001680 GO:0005515
Vimu7g00963 830 SMART WD40_4 664 700 IPR001680 GO:0005515
Vimu7g00963 830 SMART WD40_4 622 661 IPR001680 GO:0005515
Vimu7g00963 830 SUPERFAMILY WD40 repeat-like 549 826 IPR036322 GO:0005515
Vimu7g00963 830 ProSitePatterns Trp-Asp (WD) repeats signature. 605 619 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00963 Vimu-Chr7 9395905 9408238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00963 623 830 Miscellaneous Gene Families AT5G08390 26.047 1.65e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vimu7g00963 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00963 - - vun:114177037 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00963 7 9395905 9408238 Vimu7g00963 7 9395905 9408238 ECH