Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00947 ATGAGCTGGCGCAGGGTGTTGAACTCAGCACAGGCCCTGGCCGCGCACACCTTCCTGTTGTGCTTCACTCTCTTCCTCGTTCTTAAACTTGATCACGATCTCTCTTGTTCTTGGTGGGTAGTATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTGCCTGCACCATCTGCTCCACGTAATCGAAATTGGGCACCATGCCATGCCGTCGTTGCAACGCCGTTGCTTATTGCATTCGAATTGCTCCTTTGTATATATCTTGAGAGCATATATGATCTTGGCTATGCAGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGAAGAAAACTTGAGTGATGAGGCAATATGGGAAACTCTTCCGCACTTTTGGGTTGCTATTTCTATGGTGTTCTTCATTGCTGCAACAGTCTTCACACTCCTAAAACTGAGCGGTGATGTAGGTGCTCTCGGTTGGTGGGACCTGTTTATTAACTTTGCTATCGCCGAATGCTTTTCTTTCCTTGTATGTACAAAGTGGTCCAATCCTGTAATTCATAGAAATTCAAGAGAAGCCAGTAGTTCATCTTCAACTACTATTAGATATCTTGACTGGAACAGTGGTTTAGTAGTTTCTACAGATGAAAATCGATCCCAGGGGAGAATCTGTAGCATACAAGACATAGGGGGGCATTTCATGAAAGTACCAATTATTGTATTCCAGATTCTTCTCTGTATGCATCTAGAGGGAACACCTGCTTCTGCTGTATATATACCACTTCCAGTTATTTTCTCTCCGCTTTTCCTACTTCAAGGAGCTGGAGTACTGTTATCTGCATCTAAATTAGTGGAGAAACTTGTGCTTCTCCTAAGAAGTGGAGCTGCTGCAGGAATTTATTTTAGATTTTCTTCAAGAGTTCATGATTGCTTGGGGTTCTTGCATCATGGTTCCAGATTGTTGGGTTGGTGGTCAATTGACGAAGGGAGTCGGGAAGAACAAGCACGGATATACCATGAGGGAGCATCTGGGTATAATACGTTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCAAAAAAGGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAGACGGAAATCACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTGTGCAGAATTTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGCAGGCATCGCGTTCTTTGCAGCACTTGCGCAGAAAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCTATTGCTGAGCGTCTGCCTGTATATGATGTTTAG 1401 0.4325 MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHDLSCSWWVVFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESIYDLGYAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENLSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFSFLVCTKWSNPVIHRNSREASSSSSTTIRYLDWNSGLVVSTDENRSQGRICSIQDIGGHFMKVPIIVFQILLCMHLEGTPASAVYIPLPVIFSPLFLLQGAGVLLSASKLVEKLVLLLRSGAAAGIYFRFSSRVHDCLGFLHHGSRLLGWWSIDEGSREEQARIYHEGASGYNTFCGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCSTCAEKCKKCPICRDSIAERLPVYDV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00947 466 FunFam Kinesin-like protein KIN-7D, mitochondrial 396 464 - -
Vimu7g00947 466 ProSiteProfiles Zinc finger RING-type profile. 419 454 IPR001841 -
Vimu7g00947 466 SUPERFAMILY RING/U-box 410 461 - -
Vimu7g00947 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 464 IPR013083 -
Vimu7g00947 466 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
Vimu7g00947 466 SMART ring_2 419 453 IPR001841 -
Vimu7g00947 466 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 466 - -
Vimu7g00947 466 Pfam Zinc finger, C3HC4 type (RING finger) 416 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00947 Vimu-Chr7 9201842 9210167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00947 1 466 C3H Transcription Factor Family AT1G73950 72.532 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00947 - - gmx:100791390 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00947 7 9201842 9210167 Vimu7g00947 7 9201842 9210167 ECH