Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00923 ATGGCGGAAGCAGAAGACAACCTTCAAGCCTCGCCTATGGGCGAAACAAAGAACAATCATAAGAAGAATAAGAAGAAGCGCGAGAAAAAACGACCTCGGGATATTGCTATCGAGGAGCGTCTGGAAGAAGTGGAGAATGTGAATGACGCAGATAGCGACGGAGAATCCTCGAGGAAGAAGAATAAGAAGAAGAAAGTGGAAGGGGAAAGTGAAGTAGAAGAGAGAAAGGTGAAGAACAATGGTGGGTCTGGTATTATGAGCTCCGAGTCATTTGAAACTCTGGGATTGTCTGAACCTACTTATAAGGCCATTATGGATATGGGATTCCAGCACATGACTCAGATTCAAGCGAGAGCGATTCCACCTCTCTTGATTGGAAAAGACGTGCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTGGCCTTCTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAGTTTACACCTCGTAATGGAGCTGGTGTTGTTGTTATATGCCCAACAAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTCGGGTTGGTTATTGGAGGTTCAACTAGAAAACTTGAAGCTGAACGCCTAGCCAAAGGGATAAATCTATTGGTAGGAACTCCTGGTCGTCTTCTAGATCATCTTCAAAACACAAAAGGATTCATATACAAAAACTTGAAGTGCCTCATGATAGATGAAGCTGACAGAATCTTAGAAGCAAACTTTGAGGAGGAAATGAAACAAATTATTAAGATCCTTCCAAAGGTCGAGGATCTTGCCCGTTTGTCATTTCAGACTACTCCCGTCTATATTGATGTGGATGACGGGAGAACCAAGGTCACCAACGAAGGGTTGCTTCAGGGTTATGTTGTTGTACCTTGTGCCAAGCGCTTTATTGTTCTCTATTCCTTTTTGAAGAGACACCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCACACAGACATTCTTAATCTCATTCAATTGAATTGCTCAAGTATTCATGGAAAGCAAAAGCAGCAGACCCGTACAACTACCTTTTTTGATTTTTGCAAAGCAGAAAAGGGAATCTTACTATGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCTAAGGAATATATCCACAGGGTCGGTAGAACAGCTCGCGGTGAAGGTGGAAAAGGAAATGCTTTGCTTTTCCTAATTCCTGAAGAATTGCAATTTCTCCGCTACCTGAAGGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAAGTTGCAAACGTACAATCTCACCTGGAGAATTTGGTTGTCAACAATTTTTACTTGAACAAGATGGCGAAAGAAGCCTATAGATCATACATATTAGCTTATAATTCACATTCCATGAAGGATATATTCAATGTTCACCGCCTTGATTTTCAGGCTGTTGCAACTTCATTTTGTTTCTCAAACCCACCAAACGTTACACTGAACATAAACAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGACACGGATTCAGCGACAACAATCCTTATGGAAAGAGAAATGCAGATGACAAGCGGCAGTTTGTGAGGCACTAG 1683 0.4201 MAEAEDNLQASPMGETKNNHKKNKKKREKKRPRDIAIEERLEEVENVNDADSDGESSRKKNKKKKVEGESEVEERKVKNNGGSGIMSSESFETLGLSEPTYKAIMDMGFQHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSTRKLEAERLAKGINLLVGTPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHTDILNLIQLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDFQAVATSFCFSNPPNVTLNINSSKQRKKMRKVDGSRHGFSDNNPYGKRNADDKRQFVRH 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00923 560 Gene3D - 35 285 IPR027417 -
Vimu7g00923 560 SMART ultradead3 108 299 IPR014001 -
Vimu7g00923 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 485 IPR027417 -
Vimu7g00923 560 CDD SF2_C_DEAD 296 426 - -
Vimu7g00923 560 MobiDBLite consensus disorder prediction 524 560 - -
Vimu7g00923 560 MobiDBLite consensus disorder prediction 1 91 - -
Vimu7g00923 560 SMART helicmild6 335 416 IPR001650 -
Vimu7g00923 560 MobiDBLite consensus disorder prediction 51 78 - -
Vimu7g00923 560 FunFam RNA helicase 292 522 - -
Vimu7g00923 560 PANTHER RNA HELICASE 30 463 - -
Vimu7g00923 560 Pfam DEAD/DEAH box helicase 113 271 IPR011545 GO:0003676|GO:0005524
Vimu7g00923 560 CDD DEADc_DDX18 100 283 IPR044773 GO:0003724|GO:0005524
Vimu7g00923 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Vimu7g00923 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 308 455 IPR001650 -
Vimu7g00923 560 Pfam Helicase conserved C-terminal domain 311 415 IPR001650 -
Vimu7g00923 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 297 IPR014001 -
Vimu7g00923 560 SMART DUF4217_3 456 519 IPR025313 -
Vimu7g00923 560 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 241 249 IPR000629 -
Vimu7g00923 560 Pfam Domain of unknown function (DUF4217) 457 517 IPR025313 -
Vimu7g00923 560 Gene3D - 296 536 IPR027417 -
Vimu7g00923 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 435 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00923 Vimu-Chr7 8990555 8995418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00923 84 435 Eukaryotic Initiation Factors Gene Family AT3G19760 27.869 3.43e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00923 K13179 - gmx:100798885 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00923 7 8990555 8995418 Vimu7g00923 7 8990555 8995418 ECH