Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00919 ATGACAAAAATTATTAAAGAAATGTTGCCCCCTGATGTACGTGTAGCAAGAGATGCCCAAGATCTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCATCTCGTCAGAATCCAATGAAGTCTGCAACAGAGAGGAAAAGCGGACAATCGCACCCGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATATGAACAACACAAAATGGAGACCATGGACTCTTTAAAGGGTGGTAAATGGAGCAATGGAGCTGAGATGACCGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAACGGTGGAGGCATTACTTCCAAGCAGCCAGATACTGACCAAAGTTTAGATAGCTGA 408 0.4363 MTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKMETMDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGGITSKQPDTDQSLDS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00919 135 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2 59 IPR003958 -
Vimu7g00919 135 Gene3D Histone, subunit A 1 120 IPR009072 GO:0046982
Vimu7g00919 135 FunFam Negative cofactor 2 beta 1 121 - -
Vimu7g00919 135 PANTHER PROTEIN DR1 HOMOLOG 1 134 IPR044255 -
Vimu7g00919 135 SUPERFAMILY Histone-fold 2 120 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00919 Vimu-Chr7 8958659 8961818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00919 1 131 CCAAT-DR1 Transcription Factor Family AT5G23090 82.090 1.00e-77 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu7g00919 CBFD_NFYB_HMF 7.5e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00919 K21751 - rcu:8264552 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00919 7 8958659 8961818 Vimu7g00919 7 8958659 8961818 ECH