Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00913 ATGTATGCTAAAAAGACTCTCATGGAAAACATAGACAGCTCAGAACTTTCACACCCTATTGAAATAGACAAGCCCTATGAGAAGAGAATGATGAAGATTCCAAAAGTAGGAAAAAAGAATGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGGTGGATCGCTGAGATCAAGGATTCCTCGCAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTGGCTTATGACTCTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATGAACAATCATGAACAAGACTACAGCATTTTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAAGCATGCAGTTATGAAGAACCATGCACTTTCACCATCTCTTTATTCCACATTCATGCCCACCTGGAAAAACCAGATCATGATGAGAGATCAACATCACACCCTTGTTGAGGAAACTATAGTTTGTTCCATTCCCGAACAAGGCTCTTCCTGCTGTGGAGTTTCTTTCGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCGGTGTTTCTTCTCATGATGAAACCGCCTAA 618 0.4126 MYAKKTLMENIDSSELSHPIEIDKPYEKRMMKIPKVGKKNEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAALAYDSAARLLRGRNAKTNFPNPGIMNNHEQDYSILGKNPRSYQLLKHAVMKNHALSPSLYSTFMPTWKNQIMMRDQHHTLVEETIVCSIPEQGSSCCGVSFGSSKVYSSVVVAPSFGVSSHDETA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00913 205 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Vimu7g00913 205 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Vimu7g00913 205 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Vimu7g00913 205 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Vimu7g00913 205 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Vimu7g00913 205 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 38 126 - -
Vimu7g00913 205 FunFam ethylene-responsive transcription factor RAP2-11 42 101 - -
Vimu7g00913 205 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Vimu7g00913 205 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Vimu7g00913 205 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00913 Vimu-Chr7 8899090 8899707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00913 38 101 AP2-EREBP Transcription Factor Family AT5G19790 70.312 1.15e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g00913 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00913 - K09286 var:108340966 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00913 7 8899090 8899707 Vimu7g00913 7 8899090 8899707 ECH