LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00904	ATGGATGGAACATTGCTAGACAATGCCAAAGTAATGAAAACCAAGAAGGAATTCTATTCCACCTCAGATGTTCTTCAAATATTTCGTCAGCTTTGTGCAGGACTCAAGCATATGCACACCTTTGATCCTCCTTATGCACATAATGATGTGAAACCTGGTAATGTTCTCATAACACACCGAAAAGGACAGCCACCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCAAGGAAGCAAATTACGAACAGATCAGAAGCACTCCAGTTACAGGGGCTTGTTGAGCACATCTGCCCATTGACCTGGAGCTGGAATGTGATAGATCAAAAGCTGCTTGGACAGAACATGCTCTCGGACAAAGATGACATCACTTTCAGAATGTTTAGGCTGACTGTGAAAGATAGAATTCATACTACAAGGCACCAACTACAAATCTATAAAGATTTGGATCTATCACCACTTGCTTTAGACAACTTGCATGTAAAGGTCATAGGAGTCGAAATTGATTCAGCATCAGCCATATTTGTCATGTGTAGTGAGGTGCCGAGGAGGACTCAATGGGTTAACAATAAACCTTTAAAGCTTGTGCGACTTTACGAGGGGTTCAATTTGCTGTCACCAAAGGAGATACTTCAAGTCTTCAAGTTTTTTTTAGCAGTATCAGGAAACGGGCGAGGTGCGAAAGAGATGGAATTTGAGGAATGGGCAGCTGAACACTGCTCTGCACCTTTCCGAGCTCCTGAGCTGTGGGATTGTCCAAGCCAAGCTGCTATAGATGAGAGGACTGACGTTTGGTCTCTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTGGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATCGTAAATGCTCAGGTGAAATGGCCAGCTGGACCTAAGCCTCCATATCCAGAAGCTTTTCACCAGTTCGTGTCATGGATGCTTCAGCCCCAGGCTGCTATGAGGCCCCGAATAGATGATATCATCATCCACGTGGATAAGTTGATTGCAAAGTTCTCCCAATGA	1053	0.4425	MDGTLLDNAKVMKTKKEFYSTSDVLQIFRQLCAGLKHMHTFDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQITNRSEALQLQGLVEHICPLTWSWNVIDQKLLGQNMLSDKDDITFRMFRLTVKDRIHTTRHQLQIYKDLDLSPLALDNLHVKVIGVEIDSASAIFVMCSEVPRRTQWVNNKPLKLVRLYEGFNLLSPKEILQVFKFFLAVSGNGRGAKEMEFEEWAAEHCSAPFRAPELWDCPSQAAIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQVKWPAGPKPPYPEAFHQFVSWMLQPQAAMRPRIDDIIIHVDKLIAKFSQ	350

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00904	350	Gene3D	Transferase(Phosphotransferase) domain 1	205	349	-	-
	Vimu7g00904	350	Gene3D	Transferase(Phosphotransferase) domain 1	1	124	-	-
	Vimu7g00904	350	SMART	serkin_6	1	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g00904	350	ProSiteProfiles	Protein kinase domain profile.	1	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g00904	350	SUPERFAMILY	Protein kinase-like (PK-like)	12	340	IPR011009	-
	Vimu7g00904	350	Pfam	Protein kinase domain	237	340	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g00904	350	Pfam	Protein kinase domain	11	82	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g00904	350	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	45	57	IPR008271	GO:0004672\|GO:0006468
	Vimu7g00904	350	PANTHER	SERINE/THREONINE-PROTEIN KINASE 16	229	348	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Vimu7g00904		Pkinase	8.8e-10	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g00904	K08856		-	gmx:100810160	242.662

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g00904	7	8793660	8797799	Vimu7g00904	7	8793660	8797799	ECH