Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00899 ATGGCAGATGTAACCACCTACCCCCGCCACCACGGCCACCCCGACGATGACCTGATTCCTTTCCCTTATTGGGACTTAGATTTAGATTTTGATTTTGACCCCGAATTCCACCGCAACCCTTTCTCCCTCACCGACCGCGAGAACCAAGTCAATTTCGTAATGGATCTCTTTCACCAGCGCGTTGAGCAATCGCAACTCACCGATCCCTTCTCTAACGACGCCTTTTTCGGCGTTATCGACGCCCTAGACGCCATCGACCTTAGCTTCCCCAACGCCGACGACTTACTTGTCGAACGTCGGCTCTCCGTCGGATCTGACTCCGACGAATCGCTCTACCAGTCTGGAAACATCGATAGCGTGTTAGGGATCTGCACGCACTCGGAGGAAGAGTACAACGTGAACGACGACGTTTCGAACATCCCTCTCTGCTTGGACGCACTTCAATTGGAAGACAACAGAGACAGTTATGATGATTTCGAGTGGGAGGAAGTGGTCGATGAGAGAGAAGTTCTGAGCATGTTCGGCGACACCTCCGTTTCCGTCTCCGTGGGAATAGAAGAGGAGGCGGAGGAGGAAGTAGAATTTGAAATGGAGACCAACAATTTGGGGTGGCAGGTTCTGTTGAACGCCAATTTGGAGGGAACGAATTCCGAGCCTTATTTCGGAGAGAACGAGGCTTTCGTGTACGCCGCGGAGTACGAGATGTTCAGCCAATTCAACGACGTCGCCTTCGTCGGGAAGCCTCCGGCGTCCGTCTCCGCCGTGAGGAACCTGTCGGCGGTGGTCGTGAGCGCTGCTGACGTGGCAAACGAAAACGTGGTTTGCGCGGTCTGTAAGGAGGAGTTTAGGGTTGGGGAAGAGGTGAAGCAGTTGCCGTGTTCGCATCGTTATCACGGGGACTGCATTGTGCCGTGGTTGGGGATAAGGAACACGTGTCCCGTTTGTCGCTTTGAGTTTCCCACTGATGATGCTGATTATGAGCAGAGGAAGGCACAGACATTTGTTATGTGA 1011 0.5331 MADVTTYPRHHGHPDDDLIPFPYWDLDLDFDFDPEFHRNPFSLTDRENQVNFVMDLFHQRVEQSQLTDPFSNDAFFGVIDALDAIDLSFPNADDLLVERRLSVGSDSDESLYQSGNIDSVLGICTHSEEEYNVNDDVSNIPLCLDALQLEDNRDSYDDFEWEEVVDEREVLSMFGDTSVSVSVGIEEEAEEEVEFEMETNNLGWQVLLNANLEGTNSEPYFGENEAFVYAAEYEMFSQFNDVAFVGKPPASVSAVRNLSAVVVSAADVANENVVCAVCKEEFRVGEEVKQLPCSHRYHGDCIVPWLGIRNTCPVCRFEFPTDDADYEQRKAQTFVM 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00899 336 CDD RING-H2_RNF126-like 275 316 - -
Vimu7g00899 336 FunFam E3 ubiquitin-protein ligase RING1-like 236 322 - -
Vimu7g00899 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 322 IPR013083 -
Vimu7g00899 336 PANTHER SI:CH211-59O9.10 40 321 - -
Vimu7g00899 336 SMART ring_2 275 315 IPR001841 -
Vimu7g00899 336 Pfam Ring finger domain 275 316 IPR001841 -
Vimu7g00899 336 ProSiteProfiles Zinc finger RING-type profile. 275 316 IPR001841 -
Vimu7g00899 336 SUPERFAMILY RING/U-box 268 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00899 Vimu-Chr7 8751910 8752920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00899 221 332 C3H Transcription Factor Family AT3G02340 49.558 6.01e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00899 - - gmx:100794303 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00899 7 8751910 8752920 Vimu7g00899 7 8751910 8752920 ECH