Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00896 ATGGGTTCGTCGTCGGCGTCGTTCAGTTCTCCAAAGAAGAGAGCGAAATCCCAAGTAGAGGAGGATGAGGACGACGAAGAGAGCGTTTGTTGCGGGATTTGCTACGCGGAGCGAGGGGTTTCGATCGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTCGTCTGCATCATGGAATGGGCTAAGCACGAGTCTCGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCCATGCACGGCGTATTTTCTTCCTCCCGGGACGTGAAGGTCCCTCATCGTGACCAGGCCTATCATCCTCATGGGAATGTGGCAATTGGTCCTGTCGATTCTTATGGCGAAACCAAATGTGGTGTTTGTCGTGCTGGGACAGATGAAAATCTTCTACTACTTTGTGATCTTTGTGATGCTGCTTCACACACATACTGTGTTGGCCTGGGATATACTGTTCCTGAAGGTGATTGGTTTTGTCACGATTGTGCTATTTCCCGGGAGATCAATGCCAATGAAGAATCAGACCAACAATATTTTGTGCCAGAGGCTGAGCCAAGTGAAACCGTTGATATCTTTGATATTGTGAGGGAAACAGGCAGTCGGGTGATTAAAAGACCAAGGACATCTCCTTTACAACAGAACCTGTCATCTCCTTCTGCTGTTCCTTTACCAGATAGGTTAAGTAGATTCAAAGGAAAAAGTCCTGCCGAAGGTGTCAATAGTATGCAGCGTAATATTCAGGCGTTTCGTGAGAACTGGAATGCTTTGAGGAGTGGTTCATTACGGTTCCATTGTGATGCAGATCAAGCCAGCAGTACGGTTAGTCAAAAGCAAGATTCTAGATCATTATCACATGGCAAACTATATGATTCACATTCTGGGGCTTCCACAAGCGTGCAGCAATCCACTGTCCAGGGTGGTCCTTCTTCTAGCAAAACGTTGAATGAGAGAGTCTTTAAAGATAATGTTGACAAGGCTTGGAAAATGGTGGACAGAGCAAGGAGGAAGCAAGTAACTCCTCAAAGAATTAGAAGCAATCGGCAGGAAGTAGATAGACCCTCATGTAGTGGAGCGCGTAAAACATCAGTTGAACACTCTAATTTCCCAGAACTGAAAGTTCAACATTCCAAAGATTTAAACTTAAGGAACACTGCGAAAGAGAAGCAGTGTGACTATTCTAGACTCTTCCAGAATTTCAAAAATTGCTCAACTCTAAAGTTGGAAGAGAAAAAGAAAAGTAGAGTTAGATGTGAGGAGATGATACACCGTGTAAGGGACCATACTACTCACTCAGAAGGATATTGTGAAAGTCCATTGTCTAGAAAGGTCCCTACTAATATCCTGGGTGGTGCTCCATTTCGTGAAGAAGAGAGAAATGCTTGCCAGGTAACTTCGGTAGATTTAGCTTCCTCGCGTGGCAAGTTTGTTAGTGACCTCTCCCCTTGTAAGGACGTGGTTCTTGTCAATGAAGAAAAGAAATTAGCTGGTAGTCTCGAGGATGGAAGCACAGGAAAAATTAACGATGCAAAAACTGAGATCCAGTCTCTTGTCAAATTGAATCTGAAGCTCTTAACCAGAGATAAAAAATTAGGTTTTGATACCTTCAAGGTAGTTGCTAGGCAGGCCACCCATACCATCTTAGCTGCCTGCAGTTCTGAGCAGCAAAAGTGCAGCACATCCTCCTCTTGCTCAGTATGCTGTCATTCCGACAATACTCCTCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTACGCCTTTGTAAACAACGTTGTCAGTTCCACCATGATGGAGAAAGTGGGTCGTGCTTGA 1833 0.4479 MGSSSASFSSPKKRAKSQVEEDEDDEESVCCGICYAERGVSIAGEIDCCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQAYHPHGNVAIGPVDSYGETKCGVCRAGTDENLLLLCDLCDAASHTYCVGLGYTVPEGDWFCHDCAISREINANEESDQQYFVPEAEPSETVDIFDIVRETGSRVIKRPRTSPLQQNLSSPSAVPLPDRLSRFKGKSPAEGVNSMQRNIQAFRENWNALRSGSLRFHCDADQASSTVSQKQDSRSLSHGKLYDSHSGASTSVQQSTVQGGPSSSKTLNERVFKDNVDKAWKMVDRARRKQVTPQRIRSNRQEVDRPSCSGARKTSVEHSNFPELKVQHSKDLNLRNTAKEKQCDYSRLFQNFKNCSTLKLEEKKKSRVRCEEMIHRVRDHTTHSEGYCESPLSRKVPTNILGGAPFREEERNACQVTSVDLASSRGKFVSDLSPCKDVVLVNEEKKLAGSLEDGSTGKINDAKTEIQSLVKLNLKLLTRDKKLGFDTFKVVARQATHTILAACSSEQQKCSTSSSCSVCCHSDNTPQFQKSTLMPNCCRQCFYAFVNNVVSSTMMEKVGRA 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00896 610 SUPERFAMILY FYVE/PHD zinc finger 113 166 IPR011011 -
Vimu7g00896 610 MobiDBLite consensus disorder prediction 1 20 - -
Vimu7g00896 610 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Vimu7g00896 610 PANTHER F18C1.6 PROTEIN 11 607 - -
Vimu7g00896 610 MobiDBLite consensus disorder prediction 274 318 - -
Vimu7g00896 610 ProSiteProfiles Zinc finger PHD-type profile. 118 167 IPR019787 -
Vimu7g00896 610 MobiDBLite consensus disorder prediction 209 223 - -
Vimu7g00896 610 SMART ring_2 31 71 IPR001841 -
Vimu7g00896 610 MobiDBLite consensus disorder prediction 335 370 - -
Vimu7g00896 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 186 IPR013083 -
Vimu7g00896 610 Pfam PHD-finger 121 165 IPR019787 -
Vimu7g00896 610 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vimu7g00896 610 SMART PHD_3 120 165 IPR001965 -
Vimu7g00896 610 SUPERFAMILY RING/U-box 20 79 - -
Vimu7g00896 610 MobiDBLite consensus disorder prediction 274 319 - -
Vimu7g00896 610 Pfam Ring finger domain 31 72 IPR001841 -
Vimu7g00896 610 MobiDBLite consensus disorder prediction 209 241 - -
Vimu7g00896 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 95 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00896 Vimu-Chr7 8736247 8741977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00896 112 170 C2H2 Transcription Factor Family AT3G01460 38.333 1.19e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu7g00896 PHD 4.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00896 - - gmx:100808541 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00896 7 8736247 8741977 Vimu7g00896 7 8736247 8741977 ECH