Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00879 ATGGAATCTTGGAGCTTTGTCCCTGAAGAAAAGGAGAGTGTCTCCAATGAGGCACTATCCCCTCCCAACACTCTCGGGAGGACCATAAATTCTTTCTTGGGCTGGGAACTAAAAACCCCATGTGGTTTTTCCAACGACATGTTGGGTTTGGGTCAGCACCCCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGAAATGTTGGGTAAACACTTGTCCGATGATCTAATTGCCAGTGTTTCAAGCAGAAAGGTGGATGCTGGTAGACATCAGCAACACCAACACAGTGACAGAATCACAGGAACTGTTGTGGATGCCCCAAGTGGCTTTTCTCAAAGAGGGGACTCAAATTCCAAGCTTTCAAACACAAATTCCCTCATTGATTTGAAACTGGGTCGATTTGCTGACCATGGAGATGCCATTGATGCGGGGTTTTCCAAAGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCCAAGAGAGTGAGAGTTTCGGGGGTTCACTCTCAGACTGCTTATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGCAAAGATTACCACAAGAGGCACAAAGTGTGTGAGGTTCACTCCAAGACTGCTACCGTTATAGTCAATGGTATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTGGTCAAGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGTAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAGCCACAAATGGGGATTCACCCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGATCCATGCTAACATCATCCTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCTGAGAAATATGGTGTGAGTAGCTTCTGGAGACCTATCAAAGCAGAATACGGGACTGGTTTTAGGCATCTTTCTTCTATGCCTGTATCCAATGGACATCCTCAGTCAAGATCTTTGTTCCCATCATATAACGGAAAACAATTTCCTTTTCTTCATGAAAATTGTGCAACGTCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCACTATCCACCTGCCCTTGGGGCACAAAATTCTGGGTTAAGACCACTATTCCAGGACACCATAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGGCTCACTCCATGGTTATTCCAAGCGGTCATGGCCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCAGATAGTTTTCCTTCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTGTTAATATCAGACCATAATGATATTGTAAACTTTGATATGGCAGATGGTATATTCCATGGTTCAGAATTCATGAATGTTAAGGATCGACTTCCCTGCGAAGATGGTGCAACCATAGACTTGCTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAGGAGAATGATTCTTCTTGCACACTGCGGATTACATAA 1665 0.448 MESWSFVPEEKESVSNEALSPPNTLGRTINSFLGWELKTPCGFSNDMLGLGQHPIENQGFEELGFPEMLGKHLSDDLIASVSSRKVDAGRHQQHQHSDRITGTVVDAPSGFSQRGDSNSKLSNTNSLIDLKLGRFADHGDAIDAGFSKVLSSSESSTPPKRVRVSGVHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRLVKFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGSMLTSSFIRPEMLPSGVMCSEKYGVSSFWRPIKAEYGTGFRHLSSMPVSNGHPQSRSLFPSYNGKQFPFLHENCATSTTGSIFCESNSHYPPALGAQNSGLRPLFQDTIGNEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAHSMVIPSGHGHHYNMSQVSEKIGISSQTSSSRVSDSFPSELNHADGSHLSPVLISDHNDIVNFDMADGIFHGSEFMNVKDRLPCEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00879 554 Pfam SBP domain 174 250 IPR004333 GO:0003677
Vimu7g00879 554 Gene3D - 164 238 IPR036893 GO:0003677|GO:0005634
Vimu7g00879 554 MobiDBLite consensus disorder prediction 1 20 - -
Vimu7g00879 554 FunFam Squamosa promoter-binding-like protein 14 165 238 - -
Vimu7g00879 554 MobiDBLite consensus disorder prediction 89 119 - -
Vimu7g00879 554 ProSiteProfiles Zinc finger SBP-type profile. 171 251 IPR004333 GO:0003677
Vimu7g00879 554 MobiDBLite consensus disorder prediction 98 119 - -
Vimu7g00879 554 Coils Coil 522 542 - -
Vimu7g00879 554 SUPERFAMILY SBT domain 172 254 IPR036893 GO:0003677|GO:0005634
Vimu7g00879 554 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 540 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00879 Vimu-Chr7 8590836 8594234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00879 128 292 SBP-box Gene Family AT1G69170 55.152 1.28e-51 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu7g00879 SBP 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00879 - - gmx:100817547 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00879 7 8590836 8594234 Vimu7g00879 7 8590836 8594234 ECH