Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00878 ATGGAGTCTGTGTGGTTCTCCACCACTGGATCTGCTGACCCCCGTGGTGGCTTCTTGGCCGTCTTGCTTCTGTCACTACTCTTGTGCTCAACATTTTCTTCTACGGGTATTGTTTTGCTTTCTCATAAACTTTTCATGGTTGTTCAATCATATACAGAAGCCTATGATGCACTTGATCCAACTGGCAACATTACAATCAAATGGGATGTCATAAGCTGGACACCAGACGGCTATATTGTAAGTGATCGCTTCTTTCATAATGTGAGAAAATACTTGGAAAGCATCATACTGTCCTGTATTGTCTGTTTCTTTAACATAATAAATCCTATTGTACAGGCTGTTGTTACAATGTACAACTTTCAACAGTATCGGCATATTCAGGCTCCTGGATGGATACTAGGGTGGACATGGGCAAAGAAGGAAGTAATTTGGAATGTAGTGGGAGGCCAAACCACAGAGCAAGGGGACTGTTCAAGGTTCAAAGGGAACATTCCTCATTGTTGTAAGAAGGATCCAACCGTCGTGGATTTACTGCCTGGAACTCCTTACAACCAGCAGATTGCCAATTGTTGCACTGGAGGAGTCCTAACTTCATGGGCCCAGGACCCTGAACATGCTATAACCTCATTTCAACTCAGTGTTGGTTCTGCAGGAACAACTAACAAAACGGTCAAACTGCCAAGAAATTTTACCCTTAAAGCACCAGGACCTGGTTATACTTGTGGACCTGCAAAGATTGTGAAACCAACTAAATTTATTACCAAAGACAAGAGGAGAACCACTCAAGCATTGATGACCTGGAATGTTACGTGCACGTATTCTCAGTTCCTAGCTCAGAAGACTCCAACGTGCTGTGTTTCTCTTTCATCCTTCTACAACAGTACAATAGTAAACTGCCCTACCTGCACCTGTGGTTGCCAAAACAAAACAGAACCTGGAAGCTGTGTAGATCCTAATTCCCCACATTTAGCTTCAGTTGTATCACCCCCAGGCAAAGCTATAAATACACCTCTGGTCCGATGCACCAATCACATGTGTCCTATTCGAGTGCATTGGCACGTGAAACTTCAATATAAAGAGTACTGGAGGATCAAGATCACAATCACAAATTTCAATTACATGGTGAACTATTCACAATGGAACCTTGTTGTCCAGCACCCAAACTTTGACAATGTAACTCAGGTTTTCAGCTTTAACTACAAGCCGATAACACCTTATGTGGGCTTAAATGATACTGGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTACTTACTTCAGCAGGACCCCTTGGGAATGTGCAGTCTGAGCTCTTATTCCGAAAGGACAAATCAACCTTCACATTTGATAAGGGATGGGCTTTCCCTCGAAGAATTTATTTCAACGGAGATAACTGTGTAATGCCACCTCCTGACGCCTATCCATGGCTGCCAAATGCAAGTTCAAGACTAGTTTTCTCTTTACTAAGCACAGTTTTTGGCACTTTATACTGTTTGGTAATGTTATTGACTTAA 1515 0.4244 MESVWFSTTGSADPRGGFLAVLLLSLLLCSTFSSTGIVLLSHKLFMVVQSYTEAYDALDPTGNITIKWDVISWTPDGYIVSDRFFHNVRKYLESIILSCIVCFFNIINPIVQAVVTMYNFQQYRHIQAPGWILGWTWAKKEVIWNVVGGQTTEQGDCSRFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCTGGVLTSWAQDPEHAITSFQLSVGSAGTTNKTVKLPRNFTLKAPGPGYTCGPAKIVKPTKFITKDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNSTIVNCPTCTCGCQNKTEPGSCVDPNSPHLASVVSPPGKAINTPLVRCTNHMCPIRVHWHVKLQYKEYWRIKITITNFNYMVNYSQWNLVVQHPNFDNVTQVFSFNYKPITPYVGLNDTGMLWGVKFYNDLLTSAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRLVFSLLSTVFGTLYCLVMLLT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00878 504 PANTHER PROTEIN COBRA 43 491 IPR006918 GO:0010215|GO:0016020
Vimu7g00878 504 PIRSF COBRA 25 96 IPR006918 GO:0010215|GO:0016020
Vimu7g00878 504 PIRSF COBRA 100 504 IPR006918 GO:0010215|GO:0016020
Vimu7g00878 504 Pfam COBRA-like protein 112 274 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00878 Vimu-Chr7 8585275 8588771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00878 24 503 COBRA Gene Family AT3G02210 66.322 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00878 - - vun:114177145 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00878 7 8585275 8588771 Vimu7g00878 7 8585275 8588771 ECH
Vimu7g00878 7 8585275 8588771 Vimu10g00800 10 7075135 7078191 PCT