Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00876 ATGAACGGATTAAGAAGTGAACGAGCTCCTCTCTTGGAATCTCAGCGTGGCGGACGAGGAAAGAGGGATGGTGGCTCGGAAGATCAAGTCTCAGACCTTGAACACGGTGACGCAGTGCCGGCGGCGAATGTGGGATTCTGTCGAGTGATTTCACTCGCAAAACCTGAGGCTGGAAAGCTGGTGATCGGTACTGTGGCTCTTCTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCCGGGGATCTCCGGACTCCAGAGGAGAGAGATGAAGCTTTGAATGCTTTTTCATGGTTTTCCAGATCAATTTGCACTGCACTTCGAGCCTGGCTTTTTTATACTGCCAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACTGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCGACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTTATTGGTTTGAGCTTCATGTTTGCAACGTCATGGAAGTTAACGTTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCCGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCTGCTGCATTAGCTTCATCAATTGCGGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTTTGAAATAACGCGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAATTATTGTAGTTGTTATATATGGAGCTAATTTGACAATCGGGGGTTACATGTCCTCTGGTGATCTAACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTTTGTCGGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCCGAGCCAGGAAGTAAATGTCCACTGGGTGATCAAGATGGGGAAGTAGAATTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAATCATCCAGTGCTCAAGGGCATTACGTTGAAACTGCATCCTGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCGAACTTAATTGAAAGATTTTACGACCCAACCAAGGGAAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGGACCCTGTTGATTTAGAGAATGCTTCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAGAAATACCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCCGGTGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTTCTTATGAACCCAAAAATTCTCCTCTTGGATGAAGCTACCAGTGCCCTAGATGCTGAAAGTGAATACCTAGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAACACCGTTGCAGTTGTATCTGATGGCCAAATAGTTGAGAGTGGCACCCATGATGAGCTTCTTAGCAAGGAGGGTGTCTATACTGCATTAGTCAAGAGACAACTACAAACAACAACAAAAGTCGAAATCTAG 1872 0.4322 MNGLRSERAPLLESQRGGRGKRDGGSEDQVSDLEHGDAVPAANVGFCRVISLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSGDLRTPEERDEALNAFSWFSRSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAALASSIAEESFGAIRTVRSFAQEDFEITRYSEKVNETLNLGLKQAKVVGLFSGGLNAASTLSIIVVVIYGANLTIGGYMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPEPGSKCPLGDQDGEVELDDVWFAYPSRPNHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDPVDLENASKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMNPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLSKEGVYTALVKRQLQTTTKVEI 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00876 623 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 342 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g00876 623 FunFam ABC transporter B family member 25 106 373 - -
Vimu7g00876 623 PIRSF ABC_prm/ATPase_B 13 622 - -
Vimu7g00876 623 SMART AAA_5 403 597 IPR003593 GO:0016887
Vimu7g00876 623 MobiDBLite consensus disorder prediction 1 32 - -
Vimu7g00876 623 MobiDBLite consensus disorder prediction 12 32 - -
Vimu7g00876 623 ProSitePatterns ABC transporters family signature. 516 530 IPR017871 GO:0005524|GO:0016887
Vimu7g00876 623 Pfam ABC transporter 394 544 IPR003439 GO:0005524
Vimu7g00876 623 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 45 617 IPR039421 -
Vimu7g00876 623 SUPERFAMILY ABC transporter transmembrane region 48 357 IPR036640 GO:0005524|GO:0016020
Vimu7g00876 623 Gene3D ABC transporter type 1, transmembrane domain 109 373 IPR036640 GO:0005524|GO:0016020
Vimu7g00876 623 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 613 IPR003439 GO:0005524
Vimu7g00876 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 614 IPR027417 -
Vimu7g00876 623 Gene3D - 374 618 IPR027417 -
Vimu7g00876 623 FunFam ABC transporter B family member 25 374 616 - -
Vimu7g00876 623 CDD ABC_MTABC3_MDL1_MDL2 376 614 - -
Vimu7g00876 623 CDD ABC_6TM_AtABCB27_like 63 350 - -
Vimu7g00876 623 Pfam ABC transporter transmembrane region 60 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00876 Vimu-Chr7 8544462 8553246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00876 46 621 Calmodulin-binding Proteins AT2G36910 32.995 6.30e-91 304