LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00869	ATGGCAGCAAAGTTTTTGCATTCTTTAGCAGATGACAACCCAGATTTAAAAAAGCAGATAGGATGCATGACTGGGATTTTCCAACTCTTTGATCGTCATCACATTATTTCCTCTCCCCACATTACCCAGAAGAGGCTTCATCCAGGTTATTCCCTCTTCAATTATGACAGTTTGGAAAGAGGTTCTAATATCATACACCAGCCGCAATCAACAGCTGATATGAGGGGTATGAGTGATAAGCACAAAATTTCAGCTGAATCATCGAGAACCTCATTCTCTTCGTCTTGTTCATCATCCATGTCCTCTTTGGACTATAAAGCTGAAGCAGATGCTCCCTTTGATCGGATTGGTTTTCCTGAAACTCCTATGAGGGACCCAGTCATGAAGCAAGCAAGTACCTCTCCCCATTTAGGATGTCCATCCCTTGATCTGAGGGATGTGGTGAAAGAGTGTATATATAGGGAAGCCAGAGGACTGTGCAAAGAAAGGGATTCCCCTAGACAATTTCAGATGTCTAAATCTGTTGATAGAAAGCAAACACCTACTGATTTAAAGGAGTCCTTGCGAGTCCTTGCTATCCTTAGAGAAACACCTCGGCATTATGTTGAAGCTAAAGAACTTCCTAGATTATCAAATGAAGTAAAAGATGGACATTGGCATTCCATTTCAAAGGATGCTCCTCGGTTTTCTTATGATGGAAGAACAACATGTGAGGTATCTTTTGATTTGCATGATACCTTGAAATGCCCACAAAAGCTAAAAGAGCTTCCTAGACTTTCACTGGACAGTAGGGAAGGTTCATGGCGCGCAAACGGCTCTGATTCAAAACTCACTAACCTCTCAAGAAATTCCAATACAGGTGACGCCTCCACCTCAGTTGACAACATTTCTAGTCTACAACAGCGTTCAGCATCTCAGAGACGGCCACCTAGTATTGTAGCAAAGTTAATGGGCTTGGAAGCATTGCCAGAATCAAATGTGGCTAGTGATACCAAGTCAAGTTTGAGTGAAACTGACTCCACTCAAGGTAATGATCATTTTGGGAAAAATGGATTCGTTACACCACTTCCAGTTTCTAATTTCCCTGAATTCCCATTGAAAGAGAAAGAGATGACTTCCCCACGGTGGAAGAATCCCGATTTGGTTGTCAAACCAATATTGAGTACAAGGTTTCCCATTGAACCTGCACCGTGGAAGCAGCAGGATGGGAACCTAAGCTCTGAGAAACTAACTTCCAGGGTCATAAAGCCTACAGCAAGAACCCCGGATTCATTTCCTTCAGTTTATAGTGAGATTGAGAATAGATTAAAGGATCTTGAGTTTAAACAATCTGGAAGGGATCTCAGAGCACTCAAACGGATATTAGAAACAATGCAAGTAAAGGGTCTGTTAGAGACCAGAAAAGAAGAACAAGCTTCAAATGTTGTTAGAAATAAAAGAGACTATGAACTAAAATCGACCTCAATTCAGCATTCTACGAGGCAGGAAACAGTCTGGGAATCTGATTCTGCAATGGCTATAGAGTCACCAATAGTGATCATGAAACCAGCAAAAATTGTTGAAAAAAGTGGACCTTTTGCTTCTTCAGTCTTTCCAATTCATGAACTTTCTGATTCCGACAAACTTCAGAGTGGTGGTTTACATGTACATGGTAAAAAAGGGACACCTTCCAGTCAAATAGCCAAAGACCGGTCTCCTAGAAACAGTCCCAAGGATGCTTCTACCAGTTTTAGTGAAAAGAAAGCGAATAGTATCAAGACTATAAAATCCACACAATCCCTACCAAGGTCTACACAATTTCCAAAAGAAAATGGCCCAAGCTCAGTAAAGAGTTCAGGATCTGCTAGCCCAAAAATGCAACAGAAGAAGTCAGCATCGGAGAAGCAATCTTGCCTTCTTACCCCATCATCAGATTCAAATAATCCCAGAAGGCAGTTCTTTAAGCAGACAACACACTCAGGTTCTCCCAGTCAAAAACTGAGACCTAAAGTCCCTAATTCACAGAGCAGTGATGACAGACTCAGTGAGACTAGCAATGAACAAAGAAGTTTAAGTAGCCAGTGGGATGAAGTATCTCTGCAATCAGACAGTATCTCTTTCGACTCAAAGATGGATATTGAAGTTACCAGCAATTTACAATCTGCTGAAGTTGCTGATGGCCAATGCCCATCTAGGAAGGCTGTTGAGCATTTGGTTTCAGGATCCATGCATAAGAAATCAACTCTGAGGTGGGATGAGGATGAGTCAATTGCAGAACTTACAACACACGCCTCAGATCATCCAAGTCTCGGATCAGATGTTGATGTCTCGGCATACAAATTCGGTATGCCATCCCCAGTAAAGAATATATTCTATTCTCGTAAAGTTGAAAAGGCTCAAGAATCTAAAGAAAATTATCATACAGATCAGTGGAGCCCAGCAGAAGGCCTCTTGATTAACAATATAAGATATAGAGAGATCAACCACAAGAAATTGCAAAGCATAGGTCGCCTTATTCAAAAGCTTAGACAGCTAAACTCAAGTCATGATGAAACTAGAATAGATTACATAGCTTCCCTTTGTGAAAATACAAACTCAGACCACAGATACATTGCTGAGATACTATTGGCTTCGGGTCTACTTCTGAGAGCTTTGAGTTCTGAGCTGCTGACATTTCAACATCACTCATCAGGTCATCCCATTAACCCTGAGTTATTCCTTGTGTTGGAACAAACCAAGTTAAGTAGTTTGCTTTCGAAAGAAGGGGGCAGCGATGGAAAAATTGCTTACAGGAAGCTAAATACAGAGAAGTGGCACAGGAAACTCATCTTTGATACTGTGAATGAGATTCTTCGTACAAAGCTTGGCTCTTCTCGTGAGCCATGGTTCAAGCCTGATGGACTTACAAGGAAATTCGTCACTGCACAAAAGCTTCTTAAAGAACTATGCTTTGAGATACAAAAACTTAAATATGTGAAACCAGATAGCAAAGATGAAGGGGATGATCTGAAAAGTATGCTAGGGGAAGATGTGATGCGTCAGTCGGAAAATTGGACAGGTTTCCCTGGTGAATTACCCGGGGTTGTGTTGGATGTTGAGAGACAGATATTTAAGGACTTAATTGATGAATTTGTGATTGATGAAAGCTTGGGAGTAACGTATAGTAGGCACAGCAAGCTATTTGGAAAGTAG	3171	0.4119	MAAKFLHSLADDNPDLKKQIGCMTGIFQLFDRHHIISSPHITQKRLHPGYSLFNYDSLERGSNIIHQPQSTADMRGMSDKHKISAESSRTSFSSSCSSSMSSLDYKAEADAPFDRIGFPETPMRDPVMKQASTSPHLGCPSLDLRDVVKECIYREARGLCKERDSPRQFQMSKSVDRKQTPTDLKESLRVLAILRETPRHYVEAKELPRLSNEVKDGHWHSISKDAPRFSYDGRTTCEVSFDLHDTLKCPQKLKELPRLSLDSREGSWRANGSDSKLTNLSRNSNTGDASTSVDNISSLQQRSASQRRPPSIVAKLMGLEALPESNVASDTKSSLSETDSTQGNDHFGKNGFVTPLPVSNFPEFPLKEKEMTSPRWKNPDLVVKPILSTRFPIEPAPWKQQDGNLSSEKLTSRVIKPTARTPDSFPSVYSEIENRLKDLEFKQSGRDLRALKRILETMQVKGLLETRKEEQASNVVRNKRDYELKSTSIQHSTRQETVWESDSAMAIESPIVIMKPAKIVEKSGPFASSVFPIHELSDSDKLQSGGLHVHGKKGTPSSQIAKDRSPRNSPKDASTSFSEKKANSIKTIKSTQSLPRSTQFPKENGPSSVKSSGSASPKMQQKKSASEKQSCLLTPSSDSNNPRRQFFKQTTHSGSPSQKLRPKVPNSQSSDDRLSETSNEQRSLSSQWDEVSLQSDSISFDSKMDIEVTSNLQSAEVADGQCPSRKAVEHLVSGSMHKKSTLRWDEDESIAELTTHASDHPSLGSDVDVSAYKFGMPSPVKNIFYSRKVEKAQESKENYHTDQWSPAEGLLINNIRYREINHKKLQSIGRLIQKLRQLNSSHDETRIDYIASLCENTNSDHRYIAEILLASGLLLRALSSELLTFQHHSSGHPINPELFLVLEQTKLSSLLSKEGGSDGKIAYRKLNTEKWHRKLIFDTVNEILRTKLGSSREPWFKPDGLTRKFVTAQKLLKELCFEIQKLKYVKPDSKDEGDDLKSMLGEDVMRQSENWTGFPGELPGVVLDVERQIFKDLIDEFVIDESLGVTYSRHSKLFGK	1056

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00869	1056	MobiDBLite	consensus disorder prediction	326	348	-	-
	Vimu7g00869	1056	Pfam	DUF761-associated sequence motif	300	327	IPR032795	-
	Vimu7g00869	1056	MobiDBLite	consensus disorder prediction	266	308	-	-
	Vimu7g00869	1056	MobiDBLite	consensus disorder prediction	542	691	-	-
	Vimu7g00869	1056	MobiDBLite	consensus disorder prediction	558	691	-	-
	Vimu7g00869	1056	MobiDBLite	consensus disorder prediction	324	354	-	-
	Vimu7g00869	1056	MobiDBLite	consensus disorder prediction	264	309	-	-
	Vimu7g00869	1056	Pfam	Domain of unknown function (DUF4378)	860	1036	IPR025486	-
	Vimu7g00869	1056	PANTHER	LONGIFOLIA PROTEIN	1	1043	IPR033334	GO:0051513

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g00869	Vimu-Chr7	8515188	8519657	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g00869	128	1055	TRM (TON1 Recruiting Motif) Superfamily	AT1G74160	43.563	2.72e-180	547

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g00869	-		-	vum:124830690	1929.07

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g00869	7	8515188	8519657	Vimu7g00869	7	8515188	8519657	ECH
	Vimu7g00869	7	8515188	8519657	Vimu10g00810	10	7140986	7145882	PCT

Showing 1 to 2 of 2 entries