Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00868 ATGATGAATGAAAGTTCAAGTAAAGTTCAGCAAGGCAATCAACAAGAGGGCGAGAACATTAAAATTGAAAAGTTCTCAAAGGCAGCCTCCAGCTCAAGATCATGGTCAGCATTCAGAAACCCAAGAATTGTACGAGTGTCTCGTTCTTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACCGAAGGATTAGACTGTCTGTGCCAACAGCAATTCAGTTATATGATCTTCAAGACAAGCTTGGACTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGTAACCAAATCTGATATTGATAAACTCCCACCACTTCAATTTCCTCACTGTTTTGCTCAGTTTCACCAACAAACTCCACTGTCAGGTACCTCTCAGTTCTCTCTTGGAAGCTTGTATGATGGTGTTAATTCCTCTTTTTTAAAGGATGGGGGAAACCAAAATCTCATGACAAAGTCAACAAGGTATTGGGATTTAGATTCTCAAAACCGTACGGAGTTAGCTGAAAGTGTCTCAACCTCCCAGAAGGACAAGTTCTGGATCAAACCAAATGAACTAGAAAATCATCAAAATGGAATTGTTGGTGGTAGTACTCGTAATAGAGAAGAATCTTCAGCTCATTGTAAGGTCTTCCCCCTTGGGACTAATAGCTCTTACTTACCTGGTTTGTCAAACAATGCCATCACACATAACTCCTACCACCATTCTGAGCCTTCAACTCTATCTTTATCCCACCTTGGAAGCCATGAATTATTTCCTTCCCATCCAAGCAGTGGCAGTAGTGTTCAATTTTCATCTTCTAATTTCTCTGGAGCATCTGGTCCCCAATTACTTTTTTGTCCACCTTCTGCTACACCATCTGCTTTTTACTCGGTGGAAAGCGATCCAAGACAATCCAACAGTATTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATCCAATCTATTCATTCCACCACCTCACCTCTTAGACGCCTTCCAACATCATTAAGTTCCAAGCTTTTTGATTCAGATAATAGCGATCGTAGCCAACAAGGTAAGGGTAGTACTCGTTCTTGA 1095 0.4192 MMNESSSKVQQGNQQEGENIKIEKFSKAASSSRSWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPHCFAQFHQQTPLSGTSQFSLGSLYDGVNSSFLKDGGNQNLMTKSTRYWDLDSQNRTELAESVSTSQKDKFWIKPNELENHQNGIVGGSTRNREESSAHCKVFPLGTNSSYLPGLSNNAITHNSYHHSEPSTLSLSHLGSHELFPSHPSSGSSVQFSSSNFSGASGPQLLFCPPSATPSAFYSVESDPRQSNSIQIFSSSSQVMMPHPLIQSIHSTTSPLRRLPTSLSSKLFDSDNSDRSQQGKGSTRS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00868 364 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 357 IPR005333 GO:0003700
Vimu7g00868 364 Pfam TCP family transcription factor 52 178 IPR017887 -
Vimu7g00868 364 MobiDBLite consensus disorder prediction 330 364 - -
Vimu7g00868 364 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Vimu7g00868 364 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00868 Vimu-Chr7 8507694 8508788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00868 36 195 TCP Transcription Factor Family AT5G60970 54.335 2.86e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu7g00868 TCP 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00868 - - gmx:102665855 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00868 7 8507694 8508788 Vimu10g00812 10 7167394 7168515 PCT