Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00862 ATGGCCGCAAAATCAATAACACCCGACGGCGTTTCGACACTCCTCGCCAACCCTTCCCCAGATTCTTTGTCGGATCTTCCCGACATTGTTGTTCAAATAGTTGATCTCAAGCCCAGCGGCAACAGATACATGTTCTCGGCCAGGGACGGGAAAAAGAAACTGAGGGCGATTCTTCCTTCGAATATGTATTCTGAGGTTCTCTCTGGGAACATTCAAAACCTAGGTCTTGTTCGAATTCTTGATTACACTCTCAACGACATCCCCAACAAATCTGAAAAGTACCTTATTGTCACGAAATGTGAGCCGGTATCTCCCGCTCTTGAAATGGAGATCAAGAGCGAGGAGCCTGGTATTCTTTTGAAACCCAAAGAAGAGGCTGGATTGAAGACTGAAGGTGATGCTGGGATTGTTTTGAAGCAAAAGCAGGAAGTGGTGACAAAATCTGCTGCGCAGATTCTAAATGATCAACATAGAAATTCGGCTCCTGCTGCACGCATGGCAATGACGCGTAGGGTGCGTCCTCTCGTTTCGTTGAATCCTTATCAGGGTAATTGGACGATAAAGGTCAGCGTTACGAACAAAGGAAACATGCGTACCTATAAGAACGCTAGGGGTGAAGGCTGTGTATTCAATGTTGAATTGACGGACGAAGAAGGTACTCAGATCCAGGCAACGATGTTTAACGATGCCGCGAGGAAATTTTACGACAAATTTGTTCTGGGAAAGGTTTACTATATTTCGAAGGGGACATTGAAAGTTGCCAATAAACAGTTCAAAACTGTTCAAAATGATTATGAAATGACGCTCAACGAGAATTCCGAGGTGGAAGAGGTGGCGGGTGAAGCAAGTTTTGTCCCGGAAACAAAATTTAGCTTTGTCCAGATTGATCAGCTAGGTCCCTATGTCAACAAGTCTGAACTTGTGGATGTCATTGGAGTTGTTAAGAATGTATCTTCAACAATGAGCATTCGTAGGAAGAGTGACAATGAGAGCATTCCAAAGCGCGACATTACTATCGCTGATGAAACGAAGAAGACGGTAGTTGTGTCGTTGTGGAATGATCTTGCTACTAACACAGGACAAGATTTACTGGACATTGCTGATCAATCTCCAGTTGTTGCAATCAAGTCTCTCAGGGTTGGGGACTTCCAAGGCGTTTCTTTGTCAACTATAAGCAAAAGTGTAATTCTGGTAAATCCAGACGTACCCGAAGCAAAGAAACTCAGAAGCTGGTATACCAATATCCGCTATGCAACTGTTGCCTTGTTATGGTATTTTTATGATAGTCATACTTATATGTCTGCTTTGGCTCACAGGTATGAATCTGAAGGCAAAGATGCTTCAATGGACTCTGTAGGTTCTGGTTCAAGTCCAACATCTAATAATGGAATTAGATCAGTGTACACTGATCGTGTTCCACTTGCTCACATAACCTCCGACCAATCATTGGGAGAGACGAAGCCTGCGTTTTTCAGCGTTAGAGGATATATAAGCTTCATAAAGCCTGATCAAGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAACATTGGTTCTGGATATTGGTGCGAAGGATGCCAGAAAAACGATGAACAATGCAGTTTAAGGTATATTATGGTTGCGAAGGTTTGCGATACAAGTGGTGAGGCTTTCTTCTCCGTCTTTAATCAGGAAGCTGAGAAGATTGTTGGATGCTCTGCAGATGATTTAGATGACCTTAAATCACAAGAAGGAGAAGATAATCCTTATAATCTGAAATTGAAGCAAGTAACTTGGGCTCCGCATCTTTTCCGCGTTAGTGTTACCCAGAACGAGTATAATAACGAGAAGCGGCAAAGGATAACGGTTCGAGCAGTTGTGCCTGTTGACTTCGCTGCTGAATCAAGGATGATGCTGGAAGAAATATCAAAGATGAGAGCATAG 1938 0.4309 MAAKSITPDGVSTLLANPSPDSLSDLPDIVVQIVDLKPSGNRYMFSARDGKKKLRAILPSNMYSEVLSGNIQNLGLVRILDYTLNDIPNKSEKYLIVTKCEPVSPALEMEIKSEEPGILLKPKEEAGLKTEGDAGIVLKQKQEVVTKSAAQILNDQHRNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTNKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEASFVPETKFSFVQIDQLGPYVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATNTGQDLLDIADQSPVVAIKSLRVGDFQGVSLSTISKSVILVNPDVPEAKKLRSWYTNIRYATVALLWYFYDSHTYMSALAHRYESEGKDASMDSVGSGSSPTSNNGIRSVYTDRVPLAHITSDQSLGETKPAFFSVRGYISFIKPDQAMWYRACKTCNKKVTENIGSGYWCEGCQKNDEQCSLRYIMVAKVCDTSGEAFFSVFNQEAEKIVGCSADDLDDLKSQEGEDNPYNLKLKQVTWAPHLFRVSVTQNEYNNEKRQRITVRAVVPVDFAAESRMMLEEISKMRA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00862 645 NCBIfam replication factor-a protein 1 (rpa1) 27 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu7g00862 645 Pfam Replication protein A OB domain 302 399 IPR031657 -
Vimu7g00862 645 PANTHER REPLICATION FACTOR A 1, RFA1 185 606 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu7g00862 645 Gene3D - 285 419 IPR012340 -
Vimu7g00862 645 SUPERFAMILY Nucleic acid-binding proteins 468 643 IPR012340 -
Vimu7g00862 645 Gene3D - 5 116 IPR012340 -
Vimu7g00862 645 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vimu7g00862 645 FunFam Replication protein A subunit 284 421 - -
Vimu7g00862 645 CDD RPA1_DBD_B 307 412 - -
Vimu7g00862 645 CDD RPA1_DBD_A 174 277 - -
Vimu7g00862 645 Gene3D - 453 643 IPR012340 -
Vimu7g00862 645 FunFam Replication protein A subunit 5 115 - -
Vimu7g00862 645 CDD RPA1_DBD_C 479 642 IPR047192 -
Vimu7g00862 645 Gene3D - 171 280 IPR012340 -
Vimu7g00862 645 SUPERFAMILY Nucleic acid-binding proteins 11 109 IPR012340 -
Vimu7g00862 645 SUPERFAMILY Nucleic acid-binding proteins 290 414 IPR012340 -
Vimu7g00862 645 SUPERFAMILY Nucleic acid-binding proteins 173 279 IPR012340 -
Vimu7g00862 645 Pfam OB-fold nucleic acid binding domain 185 271 IPR004365 GO:0003676
Vimu7g00862 645 Pfam Replication factor-A C terminal domain 490 635 IPR013955 -
Vimu7g00862 645 FunFam Replication protein A subunit 456 643 - -
Vimu7g00862 645 FunFam Replication protein A subunit 171 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00862 Vimu-Chr7 8457072 8460158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00862 5 642 Core DNA Replication Machinery Family AT5G08020 66.354 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00862 K07466 - gmx:100777091 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00862 7 8457072 8460158 Vimu7g00862 7 8457072 8460158 ECH