Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00859 ATGGCTTTCTTTGGTAGACTTGGGAATTTGTTAAGACAGACCGCTAGCAGACAGGTTGGTTCAGAGTTGCGGTCATCCCCTTCCTTATTCCAGGCCATACGCTGTCTGTCTTCTGCTCCAAGCTCCAAGCTGTTTATAGGAGGTGTTTCGTTTTCCACTGATGAGCAAAGCTTGAGGGAAACTTTTGCAAAATACGGTGAAGTTGTTGATGCAAGGATCATTATGGATCGTGAAACTGGAAGATCCAGGGGGTTTGGATTTGTTACATACACGTCCGTTGAGGAGGCATCGAGTGCTATTCAGGCCTTGGATGGTCAGGTAACACAGCCTACTCCATTCATGCTATTGACTGCTCTGTCCCTCAATTTTGGATCGAGAATTACGCTTACCGTGTACTCCATTATTATGGCTCCTTTGTTATTTTTGAATGACAGCAAGCTATTTTGCTTAATCATTAGAAGACCTTTAGGATGGGAAGGCGCTATCCAGGCTGACCTTCATGGTCGCCAGATTAGGGTAAATTATGCTAATGAAAGACCGCGAGGTGGTGGCTATGGTGGTGGATATGGTGGTGGATTTGGCGCTGGAGGTGGTGGTGGCTATGGAGGTGCATATGGTGGTGGTGGCGGCGGCTATGGTGGAAATGCTGGAGGTGGTTATGGTGCTGGCGGCTATGGTGGAAATGCCGGAGGTGGTTATGGCGGTGGTAGCTATGGTGGAAATGCTGGTGGTGGTTATGGTGGTGGCGGGGGAAGCTATGGTGCTGGTGGCTATGGATCAGGTGGCAATTTTGGGGACAGTGGCTCTGGGAATAGCCATCCTGCTGCTGACAGTTTTGGAACTAGTGGTGCTGGTGGGAATTTTGGTGATGCTGGTGGAATAGGAAATCATGAAAGCTCTGCTGGTTTTGGCAGTAGTGGATACGATGGAAGTGCTGTGGATGGTAGCGGGGCAAGTACTGGAACCAGCTTTGCTGATGGAAGTGGAGGGTTAGGCAGCGGTCAATTTGATAGCAAAGCAAATGGAGATGAGGATTTTGGAGATTACAGGGATGACGACACTGATAATTTTGCCAAAAGGGCTTGA 1086 0.488 MAFFGRLGNLLRQTASRQVGSELRSSPSLFQAIRCLSSAPSSKLFIGGVSFSTDEQSLRETFAKYGEVVDARIIMDRETGRSRGFGFVTYTSVEEASSAIQALDGQVTQPTPFMLLTALSLNFGSRITLTVYSIIMAPLLFLNDSKLFCLIIRRPLGWEGAIQADLHGRQIRVNYANERPRGGGYGGGYGGGFGAGGGGGYGGAYGGGGGGYGGNAGGGYGAGGYGGNAGGGYGGGSYGGNAGGGYGGGGGSYGAGGYGSGGNFGDSGSGNSHPAADSFGTSGAGGNFGDAGGIGNHESSAGFGSSGYDGSAVDGSGASTGTSFADGSGGLGSGQFDSKANGDEDFGDYRDDDTDNFAKRA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00859 361 MobiDBLite consensus disorder prediction 341 361 - -
Vimu7g00859 361 SMART rrm1_1 43 116 IPR000504 GO:0003723
Vimu7g00859 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 107 IPR000504 GO:0003723
Vimu7g00859 361 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 269 - -
Vimu7g00859 361 CDD RRM2_NsCP33_like 43 106 - -
Vimu7g00859 361 MobiDBLite consensus disorder prediction 301 329 - -
Vimu7g00859 361 MobiDBLite consensus disorder prediction 301 361 - -
Vimu7g00859 361 SUPERFAMILY RNA-binding domain, RBD 39 107 IPR035979 GO:0003676
Vimu7g00859 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 178 IPR000504 GO:0003723
Vimu7g00859 361 Gene3D - 36 252 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00859 Vimu-Chr7 8441042 8443558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00859 42 118 Eukaryotic Initiation Factors Gene Family AT3G16380 38.961 5.18e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00859 K12741 - gmx:100799124 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00859 7 8441042 8443558 Vimu7g00859 7 8441042 8443558 ECH