Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00855 ATGGCGTCTTCGTCGTCGCTGGCGAAGCGATGCCACTACGAAGTGCTCGATCTTCCCCAAGACTGTTCTCCCGAGGAGATTCGCTCCTCCTACCGCCGCCTTGCCCTTCAGCGCCACCCGGACAAGCTCGTAAAATCGGGTATCTCCCAAGAGGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCATACGAAGTTCTCTCCGACCCCAAGGAACGCGCTTGGTACGATTCCCACCGTTCCCAAATCCTCTTCTCCGACCCTGATTCCCTCTCCAAATCGGTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCTGACACCGGAAAGGGCTTCTATAAAGTTTATTCTGATGTTTTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGGAAAATGGGGCTCGGAGTTGAGGCGGTTCGACAGGCTCCTCTAATGGGGAACTTGGATAGCCCCTACGCGCAGGTCACTGCGTTTTATGGATATTGGTTAGGGTTTTGTACTGTGATGGACTTTTTTTGGGTGGATGAGTATGATGTTATGGCAGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAGGAGGAGAATAATAAGGCGAGGAAGAAGGCGAGAAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTCGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAGGGTGAAGAAGAATATGGAGATGGAGAGGAAGAAGGAGGAAGAGAGGGAGAAAAAGAAGAGGTTGGAGAAGGAGAGGAAGGAGAGGGCCATGGCGTATGAGGAGGCTGATTGGACCAAGGTTGATAATGAGGAGGAGGTAGAGGAATGGGTCGAGGAGGGGGATGAGGAGAAGAAGAAGAATGATAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAAAATCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAAGGATTCCATTGGTGATGAGCAGGATTTGGAAGAAGGAAAGGAGGGACTGGGAAATGAGGAAGATGGGGTTGGGGTGGATGGAGATGGTGGTGATGGGGCTGGTGATTTGGAAGTGAGGATTCGGGATGATCTTAATGTTGAAGACGGGGTAATTAGAAACGGGGTTGAACCGGATGATGATGATGATGGCGGTGGTGATGAGTTTTCCGATGCTTCGCATGCGAAGGAGGGGAAAGATTCCAATGGGTCGGTTAATCTTGATGATAGTGGCAATCAAGATGGTGATAACGATGAAAATGGTGTTCTTGATGAGTTTTCCGATGCTTCGCATGCGAAGGAGGGGGAAGATTCCAATGGGTCGGTTAATCTTGATGATAGTGGCAATCAAGATGGTGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGCCACAAGAACAGAAAGCCACGAGCTTCAACCCACAAATCCAAGGCTTCAATAGTTCCATCTCAAATTGAAACTGAGAAGGATGAATTTGGCCCTATGGAGTACAACAACCGGAAGTCCACAAAAAAGAAACGTAGAGCTAAGAAAGAGAAGGGTAGGGAAAATTGGGAAGAATCTCAGGGGACTGCTTCCAGTTGCAATGATGAGAACATAAACGGTAATGGATATGACAATTCTCATGGAGAGGAGTCTTGTTCCCAACATTTTACGGAAAATGGGGATAACATTATTGGGAATGAGCAGGTTAGTAGAGGTAATAAGATTTCAAACCAACCCGCTGATAAAAAGGGAGCTGGCAAGGACACAAAAATCACAGCCAAAATTTCATCCAAAGGAAGAAAAGCAAAGGTGACATCGAAAAACATTGGTAATACTTGTGATGCGTGTGGAGAGGAGTTTGAGTCAAGAAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAATAAGAGGTCGATAA 1956 0.4749 MASSSSLAKRCHYEVLDLPQDCSPEEIRSSYRRLALQRHPDKLVKSGISQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPDSLSKSVVPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKIHANEINFARKMGLGVEAVRQAPLMGNLDSPYAQVTAFYGYWLGFCTVMDFFWVDEYDVMAGPNRKSRRLMEEENNKARKKARREYNDTVRRLGDFVKKRDKRVIDMRVKKNMEMERKKEEEREKKKRLEKERKERAMAYEEADWTKVDNEEEVEEWVEEGDEEKKKNDKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFKDSIGDEQDLEEGKEGLGNEEDGVGVDGDGGDGAGDLEVRIRDDLNVEDGVIRNGVEPDDDDDGGGDEFSDASHAKEGKDSNGSVNLDDSGNQDGDNDENGVLDEFSDASHAKEGEDSNGSVNLDDSGNQDGDNDENGVLEAMVAGHKNRKPRASTHKSKASIVPSQIETEKDEFGPMEYNNRKSTKKKRRAKKEKGRENWEESQGTASSCNDENINGNGYDNSHGEESCSQHFTENGDNIIGNEQVSRGNKISNQPADKKGAGKDTKITAKISSKGRKAKVTSKNIGNTCDACGEEFESRNKLHKHLGDSGHATIIRGR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00855 651 ProSitePatterns Zinc finger C2H2 type domain signature. 622 644 IPR013087 -
Vimu7g00855 651 MobiDBLite consensus disorder prediction 534 586 - -
Vimu7g00855 651 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Vimu7g00855 651 SMART dnaj_3 10 72 IPR001623 -
Vimu7g00855 651 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Vimu7g00855 651 MobiDBLite consensus disorder prediction 364 390 - -
Vimu7g00855 651 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vimu7g00855 651 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vimu7g00855 651 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vimu7g00855 651 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Vimu7g00855 651 MobiDBLite consensus disorder prediction 590 604 - -
Vimu7g00855 651 MobiDBLite consensus disorder prediction 312 613 - -
Vimu7g00855 651 CDD DnaJ 11 69 IPR001623 -
Vimu7g00855 651 MobiDBLite consensus disorder prediction 312 352 - -
Vimu7g00855 651 Pfam DnaJ domain 12 77 IPR001623 -
Vimu7g00855 651 Gene3D Classic Zinc Finger 287 350 - -
Vimu7g00855 651 SUPERFAMILY beta-beta-alpha zinc fingers 288 338 IPR036236 -
Vimu7g00855 651 MobiDBLite consensus disorder prediction 435 451 - -
Vimu7g00855 651 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vimu7g00855 651 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Vimu7g00855 651 SMART c2h2final6 300 324 IPR013087 -
Vimu7g00855 651 SMART c2h2final6 620 644 IPR013087 -
Vimu7g00855 651 Coils Coil 238 267 - -
Vimu7g00855 651 MobiDBLite consensus disorder prediction 399 414 - -
Vimu7g00855 651 Gene3D DnaJ domain 2 91 IPR036869 -
Vimu7g00855 651 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Vimu7g00855 651 Coils Coil 196 216 - -
Vimu7g00855 651 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Vimu7g00855 651 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 647 IPR044648 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00855 Vimu-Chr7 8398701 8401825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00855 1 647 C2H2 Transcription Factor Family AT1G74250 49.343 1.91e-180 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g00855 DnaJ 1e-20 CL0392