Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu7g00843 | ATGGAAGGAGATCAAATTCAAGAATTCAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCTTGTGGCAGATCCTTGGGGGGCCACATGAGGTCTCATATCACCAACTTGTCGTCGGAGGAAAAAGAGAAGCTTCCGACGAGGAAGCTTTTTTCGTCGTCTCTCAACAATGATGGAGACAAAGATTCCGAAGCTGCTGCAACCAACGCTGGCTATGGCCTCCGAGAGAACCCCAAGAAGACTTGGAGAATCTCGGATCATTCGAGCGAAGACGCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGCGTTCCACTCTTGGAAGGCCTTGTTTGGTCACATGAAATGCCACTCCGAGAAAGAGAGAGCTTCTGACAGCTTGGAAGATCAAGATTCGTGGACTAATGCTAAGGTGGTCATGGATAGTCACTCTGATAACGAAGCAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGAAGAACGAGGTACACGGTTGCTTCTGCCGCAGCAACTTCTTCGGTTGTGTCTTTTGCCAATCCTTCCTCTTCTCTCTCTGAGGTTGAGCAGGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTCAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCCGAGTCCTCTGACAACAACTCTGCTTATTTCGAAGCTCGATCTTCGGTTCGAACTAATCTGGTTGCCAAATTTGATGGCAGCACTGACTTCACGCCTAACACTGCAAGAATGATCAAGCAAAGTGATAATAAGTGGGAGGTTGGGAATTCCGAAAATCCCAACTCAATCAGAGGAAAGAGTTCGCAGCGTTTGACTACTGCTGCTGCTACTGTGGAGACTACTGAAAATGGATTTGGAGCGAACAAAAGCGGAGTTTCTAGTAAAGGGTATGAAAAGGTCAACAACTCTGAGCTTCAGTATGGGTCTGCATTGGAGGATTCAGAAGGGGAACGTGGGAGGAGCAGAGTCAATGAACCAGAATCAATTTTATCAAAGTCCGCTGCTAAAGGCAACAAGTACAATTCGATCAAGACAAAGCTTCTCGGCTCTGAATTGAAGTCAAACAAGAACTGGGTGGACAAGGCTTCAGAACCTGAATCAAGCAAGAACCCTCACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAATAAAACCTTCCACTCATACCAAGCTCTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAGGGATGCTTTGCTTCGAGAAATGAGAGCAGCGAAAACAGCATTGAAACTGATCTCTCTCCTGATCCAATAACAACCAAACACAAGCTCGTGAACAACACTGACCGTGAGTATCTTGGGGAACAGCAACAGGGTGCTGGTTTTCATGATGAGGTGGAAACAGTTACTGAGTCCAAGAAGAGCAAGGGGCACGAGTGCCCAATTTGCCTCAAAGTTTTTCCATCAGGCCAAGCCTTGGGTGGCCACAAGAGATCTCATATGACTGCTGGGTCTGAGAGTAGAAACTTTCAAACAGTTGTACTTCAGGAACCGGTGGCAGAAATCAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTGAGGAAGAAAGCAATAGTCATGCTGACTCTAACAGACCCTGGTGGGTAGTACAAGACAACCACAAGCAAGAGGCACTGGTAGGCCTGATCTCATAG | 1692 | 0.471 | MEGDQIQEFKHACKFCGKCFPCGRSLGGHMRSHITNLSSEEKEKLPTRKLFSSSLNNDGDKDSEAAATNAGYGLRENPKKTWRISDHSSEDALVFDKFCKECGKAFHSWKALFGHMKCHSEKERASDSLEDQDSWTNAKVVMDSHSDNEATAPNKRRRSKRRTRYTVASAAATSSVVSFANPSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTNLVAKFDGSTDFTPNTARMIKQSDNKWEVGNSENPNSIRGKSSQRLTTAAATVETTENGFGANKSGVSSKGYEKVNNSELQYGSALEDSEGERGRSRVNEPESILSKSAAKGNKYNSIKTKLLGSELKSNKNWVDKASEPESSKNPHKRGKFECTTCNKTFHSYQALGGHRASHKKIKGCFASRNESSENSIETDLSPDPITTKHKLVNNTDREYLGEQQQGAGFHDEVETVTESKKSKGHECPICLKVFPSGQALGGHKRSHMTAGSESRNFQTVVLQEPVAEIRDFLDLNLPAATEEESNSHADSNRPWWVVQDNHKQEALVGLIS | 563 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu7g00843 | 563 | SUPERFAMILY | beta-beta-alpha zinc fingers | 8 | 35 | IPR036236 | - | |
| Vimu7g00843 | 563 | MobiDBLite | consensus disorder prediction | 53 | 72 | - | - | |
| Vimu7g00843 | 563 | Pfam | C2H2-type zinc finger | 99 | 121 | - | - | |
| Vimu7g00843 | 563 | Pfam | C2H2-type zinc finger | 11 | 33 | - | - | |
| Vimu7g00843 | 563 | Pfam | C2H2-type zinc finger | 387 | 411 | - | - | |
| Vimu7g00843 | 563 | Pfam | C2H2-type zinc finger | 476 | 500 | - | - | |
| Vimu7g00843 | 563 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 478 | 498 | IPR013087 | - | |
| Vimu7g00843 | 563 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 124 | IPR013087 | - | |
| Vimu7g00843 | 563 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 11 | 33 | IPR013087 | - | |
| Vimu7g00843 | 563 | MobiDBLite | consensus disorder prediction | 321 | 335 | - | - | |
| Vimu7g00843 | 563 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 547 | - | - | |
| Vimu7g00843 | 563 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 476 | 498 | IPR013087 | - | |
| Vimu7g00843 | 563 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| Vimu7g00843 | 563 | SMART | c2h2final6 | 11 | 33 | IPR013087 | - | |
| Vimu7g00843 | 563 | SMART | c2h2final6 | 387 | 409 | IPR013087 | - | |
| Vimu7g00843 | 563 | SMART | c2h2final6 | 476 | 498 | IPR013087 | - | |
| Vimu7g00843 | 563 | MobiDBLite | consensus disorder prediction | 316 | 344 | - | - | |
| Vimu7g00843 | 563 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 389 | 409 | IPR013087 | - | |
| Vimu7g00843 | 563 | Gene3D | Classic Zinc Finger | 384 | 498 | - | - | |
| Vimu7g00843 | 563 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| Vimu7g00843 | 563 | MobiDBLite | consensus disorder prediction | 288 | 307 | - | - | |
| Vimu7g00843 | 563 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 13 | 33 | IPR013087 | - | |
| Vimu7g00843 | 563 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 409 | IPR036236 | - | |
| Vimu7g00843 | 563 | MobiDBLite | consensus disorder prediction | 143 | 162 | - | - | |
| Vimu7g00843 | 563 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 387 | 414 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu7g00843 | Vimu-Chr7 | 8294504 | 8296195 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu7g00843 | 4 | 534 | C2H2 Transcription Factor Family | AT1G26610 | 33.635 | 3.06e-58 | 199 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Vimu7g00843 | zf-C2H2_6 | 2e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu7g00843 | - | - | gmx:102669916 | 863.988 |