Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00829 ATGGACTGCATCACCAAAAATTGTTGTGCGATGGTCAAACTGAAAGCCGTGATGGCCAATTTTGTTCGAACCGGTCAGCAAGGGCGGCTCGACCGGTCTCTGGCTCCAAAACGTACAGATTCTTCTCTATTTAATCGAGGCATTTCTTGTTTGGGTTTGGTTTTGGTAGGTAAAGTTGTTATAGGGGAATCCTTGGAAACAGACAGAGAGGTTTTGCTGAAGCTGAAATCCTACCTGGACAGCAAAACTCTTCAAGACAAAGGAGCGTACAATTACTGGAACACCAGTAGCTCCAATCCTTGTGAATGGAGTGGAATTTCATGCAGTGCTACGGGGAGGGTGGTTCGCATAGGCCTTTCTCAGAGTGACATCACCGGTGAGATATTCAAGAATTTCTCGCAGCTCACTGAACTCAGGTACCTTGATCTCTCTCAGAACACGCTCTCTGGTGAGATTCCTGAGGATTTGAGGCGCTGCTACAAGCTCGTGCATCTCAACCTATCACATAACATTCTTGAAGGGGAGCTGAACTTGACTGGATTGACAAGCTTGCACACACTGGACTTGTCAAATAACAGATTTTTTGGGGATATTGGGTTGAATTTCCCTGCCATTTGTGACAATTTAGTCACTCTGAACGTCTCGGGTAATAATAACTTGACTGGCAGGATCGAAAACTGCTTTGATCAATGTCTCAAGCTGCAGTACTTGGATTTGAGCACCAACAGTCTGAGTGGAAGCTTGTGGATGAACTTTGCGAGGCTCAAAATGTTTTCTGTCGCGGAGAACTATCTGAGTGGGACTATTCCTTTGGAAGCTTTGCCTTTGAATTGCAGCCTTGAAGAACTAGACCTTTCACAAAATGGATTTGTTGGTGAGGCACCTAAGGGGGTTGCTAACTGCAAGAATTTAAGCAGTCTGAATCTTTCTAGTAACAAATTTACCGGGGGTATCCCTGTCGAAATAGGATCCATTTCCCGGCTGAAAGCATTGTACTTGGGGAACAACACCTTTTCAAGAGAGATTCCTGAGTCCCTTCTGAACTTGACCAATTTGACCTTCTTGGATTTGAGCAGAAACCAATTTGGTGGGGAAATACAAGAGATATTCGGGAAATTTAGGCAAGTAAGTTTTCTTCTGTTGCACTCAAATAACTACACTGGAGGATTGAGATCCTCAGGAATTCTCACATTGCCAAACCTTTGGCGGTTAGACGTAAGCTACAATAACTTTTCAGGTCCGTTACCAGTTGAGATCTCTCAAATGTCAAGTCTGAGGTTTCTAATGTTATGCTACAACCAGTTCAATGGATCAATTCCACCGGAATTTGGAAACATGACTCAACTGCAAGCGCTTGACCTTGCCTTCAACAATTTGAGTGGGTCTATACCACCAACCCTCGGAAAGTTAAACTCCCTCTTGTGGTTGATGCTAGCAAACAATTCTTTAACTGGAGAAATCCCTCCAGAGTTGGGAAACTGTTCAAGCTTATTATGGCTAAACCTTGCCAACAATAAGCTCTCTGGAAAATTGCCTTCTGAACTGTCCAAAATTGGAAGGAATGCCACGACCACATTTGAATACAATAGGCGAAACTATAGAATGGTTGCTGGATCTGGTGAATGTTTGGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATGACCTCTTAACAAGGAAAAAATGTAGAGAACTTTGGGACAAATTGATCAAAGGGTATGGTGTTTTCCCGTTTTGTACACCTGGTAATTCCTCTCGCGTAACACAGATATCCGGGTATATTCAGCTAAGTTCGAACCAGCTCACCGGTGAAATTCCTCCAGAGATTGGGTCAATGGTCAACTTCAGCATGATGCACTTGGGGTTCAACAATCTCTCTGGGAAGTTACCTCGAGAGATGGGAAGTGTATCCATAGTGGTATTAAACATCACAAGAAACGAGTTTTCAGGCGAAATTCCCCAAGAAATTGGCAACTTGAAATGTCTGATGAATCTGGATCTGTCGTACAACAATTTCTCGGGAATGTTTCCAACGAATTTGAACAAATTGACAGAGCTTAGCAAGTTCAACATCTCATACAATCCCTTCATATCAGGTGAGGTCCCATCAAACGGACAGTTCGCAACCTTTTTAGAAGATTCTTATTTAGGTAACCCCCTTTTGAAACTACCCCAGTTTCTTCAGAACACTAGCAATGACAGAAACACCACCTCTCAGAAAGACCATAAAAAGTCCTCAAGACTACCTTTGCTTTTGGTGTTTGCCGTCATAACACTGGTTTTCATAGTATGCGGACTTCTCACTATCTTAGTCTGCGTATCGGTGAAAGGCCCTTCAGAGGAACCAAGATACCTCTTGAGGGACACAAAACAGTGGCATGATTCCAGCAGCTCCGGATCCTCATCATGGATGTCCGACACAGTGAAGGTCATCCGTTTGAACAAGACAGCTTTCACACATGCCGACATTCTGAAAGCAACTGGCAGCTTCTCCGAGGACAGAATCATAGGAAAAGGAGGGTTTGGAACAGTGTACAAGGGAGTGTTTTCAGACGGCAGACAAGTGGCAGTGAAGAAGCTTCAAAGGGAAGGCCTGGAAGGTGAGAAGGAATTCAAAGCTGAAATGGAGGTTCTGAGTGGTCATGGCTTTGGTTGGCCTCATCCAAACCTGGTCACACTCTACGGCTGGTGCCTAAACGAGTCAGAAAAGATACTAATTTATGAGTACATAGAAGGTGGAAGCTTGGAGGATGTAGTGATTGACAGAACACGTTTGACATGGAGGAGGAGGCTAGAAGTGGCAATCGATGTGGCACGTGCACTGGTGTATCTACACCACGAATGCTACCCTTCAGTTGTGCACAGAGATGTGAAGGCCAGCAATGTGTTACTAGATAAAGATGGGAAGGCGAAGGTAACTGATTTTGGGCTTGCTAGAGTGGTTGATGTTGGGGATAGCCATGTAAGCACTATGGTGGCTGGGACAGTGGGGTACGTTGCGCCTGAATATGGACACACATGGCAGGCTACTACAAAAGGGGATGTGTACAGTTTTGGAGTTTTGATCATGGAGCTTGCAGCAGCAAGAAGAGCAGTGGATGGAGGGGAAGAGTGCTTGGTGGAATGGGCGAGGCGTGTTATGGGTTATGGACGACACCATCATCGTCATCATCACGGGTTGAGTCGGTCTGTGCCAGTTCTGCTGATGGGTTCTGGGCTTGTTGGTGGGGCTGAGGAGATGACTGAGTTGCTGAGGATTGGAGTGATGTGTACAGCTGATGCACCACAGGCCAGACCGAACATGAAAGAGGTTCTTGCTATGCTGATTAAGATATTTAACCTCAAGGACCACTCCACTTATGGATACATTGTTTAG 3393 0.4497 MDCITKNCCAMVKLKAVMANFVRTGQQGRLDRSLAPKRTDSSLFNRGISCLGLVLVGKVVIGESLETDREVLLKLKSYLDSKTLQDKGAYNYWNTSSSNPCEWSGISCSATGRVVRIGLSQSDITGEIFKNFSQLTELRYLDLSQNTLSGEIPEDLRRCYKLVHLNLSHNILEGELNLTGLTSLHTLDLSNNRFFGDIGLNFPAICDNLVTLNVSGNNNLTGRIENCFDQCLKLQYLDLSTNSLSGSLWMNFARLKMFSVAENYLSGTIPLEALPLNCSLEELDLSQNGFVGEAPKGVANCKNLSSLNLSSNKFTGGIPVEIGSISRLKALYLGNNTFSREIPESLLNLTNLTFLDLSRNQFGGEIQEIFGKFRQVSFLLLHSNNYTGGLRSSGILTLPNLWRLDVSYNNFSGPLPVEISQMSSLRFLMLCYNQFNGSIPPEFGNMTQLQALDLAFNNLSGSIPPTLGKLNSLLWLMLANNSLTGEIPPELGNCSSLLWLNLANNKLSGKLPSELSKIGRNATTTFEYNRRNYRMVAGSGECLAMKRWIPADYPPFSFVYDLLTRKKCRELWDKLIKGYGVFPFCTPGNSSRVTQISGYIQLSSNQLTGEIPPEIGSMVNFSMMHLGFNNLSGKLPREMGSVSIVVLNITRNEFSGEIPQEIGNLKCLMNLDLSYNNFSGMFPTNLNKLTELSKFNISYNPFISGEVPSNGQFATFLEDSYLGNPLLKLPQFLQNTSNDRNTTSQKDHKKSSRLPLLLVFAVITLVFIVCGLLTILVCVSVKGPSEEPRYLLRDTKQWHDSSSSGSSSWMSDTVKVIRLNKTAFTHADILKATGSFSEDRIIGKGGFGTVYKGVFSDGRQVAVKKLQREGLEGEKEFKAEMEVLSGHGFGWPHPNLVTLYGWCLNESEKILIYEYIEGGSLEDVVIDRTRLTWRRRLEVAIDVARALVYLHHECYPSVVHRDVKASNVLLDKDGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGHTWQATTKGDVYSFGVLIMELAAARRAVDGGEECLVEWARRVMGYGRHHHRHHHGLSRSVPVLLMGSGLVGGAEEMTELLRIGVMCTADAPQARPNMKEVLAMLIKIFNLKDHSTYGYIV 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00829 1130 Gene3D Ribonuclease Inhibitor 226 392 IPR032675 -
Vimu7g00829 1130 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 916 1122 - -
Vimu7g00829 1130 Gene3D Ribonuclease Inhibitor 594 745 IPR032675 -
Vimu7g00829 1130 Pfam Leucine rich repeat 130 170 IPR001611 GO:0005515
Vimu7g00829 1130 Pfam Leucine rich repeat 303 362 IPR001611 GO:0005515
Vimu7g00829 1130 Gene3D Phosphorylase Kinase; domain 1 799 915 - -
Vimu7g00829 1130 PRINTS Leucine-rich repeat signature 181 194 - -
Vimu7g00829 1130 PRINTS Leucine-rich repeat signature 138 151 - -
Vimu7g00829 1130 SUPERFAMILY RNI-like 269 512 - -
Vimu7g00829 1130 FunFam Inactive leucine-rich repeat receptor-like protein kinase 272 368 - -
Vimu7g00829 1130 Pfam Leucine rich repeat N-terminal domain 66 109 IPR013210 -
Vimu7g00829 1130 Pfam Leucine Rich repeat 182 200 IPR001611 GO:0005515
Vimu7g00829 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 958 970 IPR008271 GO:0004672|GO:0006468
Vimu7g00829 1130 SMART LRR_typ_2 181 212 IPR003591 -
Vimu7g00829 1130 SMART LRR_typ_2 446 469 IPR003591 -
Vimu7g00829 1130 SMART LRR_typ_2 135 159 IPR003591 -
Vimu7g00829 1130 SMART LRR_typ_2 398 422 IPR003591 -
Vimu7g00829 1130 SMART LRR_typ_2 349 372 IPR003591 -
Vimu7g00829 1130 SMART LRR_typ_2 470 494 IPR003591 -
Vimu7g00829 1130 SUPERFAMILY L domain-like 599 723 - -
Vimu7g00829 1130 Gene3D Transferase(Phosphotransferase) domain 1 916 1126 - -
Vimu7g00829 1130 Gene3D Ribonuclease Inhibitor 393 536 IPR032675 -
Vimu7g00829 1130 ProSiteProfiles Protein kinase domain profile. 836 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00829 1130 SMART serkin_6 836 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00829 1130 SUPERFAMILY Protein kinase-like (PK-like) 818 1115 IPR011009 -
Vimu7g00829 1130 Pfam Protein kinase domain 837 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00829 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 116 271 - -
Vimu7g00829 1130 FunFam Suppressor of npr1-1 constitutive 4 805 915 - -
Vimu7g00829 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 373 534 - -
Vimu7g00829 1130 Gene3D Ribonuclease Inhibitor 64 218 IPR032675 -
Vimu7g00829 1130 SUPERFAMILY RNI-like 111 319 - -
Vimu7g00829 1130 CDD STKc_IRAK 842 1117 - -
Vimu7g00829 1130 ProSitePatterns Protein kinases ATP-binding region signature. 842 865 IPR017441 GO:0005524
Vimu7g00829 1130 FunFam Leucine-rich repeat receptor-like kinase 71 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00829 Vimu-Chr7 8191277 8195621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00829 74 1117 Receptor kinase-like Gene Family AT4G39400 33.535 1.20e-149 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Vimu7g00829 Pkinase 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00829 - - vum:124845100 2082.37