Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00822 ATGTCGCGTGAGCTTAAAAGGACGAAGTTAACCGGTTGCGTGGTGGGTCGGAAGGTGAAGGGGTTGGGAGTGATATGGTGCGTGAGGCGTAACGTAATGGGGTGTGTGGTGGCGAAGCAGGCTGTTTCTGTCACACCCGCGATTGAGCACTCGGTTGAGTCGGATAAGAACAGGAAGAAGAAGACTGAGTCTGCTAGGAGCGAGTTGGGCGAGTCAGGGAGAGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGGTTGGGTAACTTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCAGGTTGGCCAGCGTGGCTCAGCGCCGTCGCAAGTGAGGCCATTCACGGTTGGGTTCCTCTTCGAGCTGACGCATATGAGAAACTTGAAAAGATTGGCCAGGGAACATATAGTAGTGTTTTCAGAGCAAAGGAGATTGAGACCGGAAAGATAGTAGCTTTGAAGAAGGTGAGATTTGACAATTTTGAGCCGGAGAGTGTGAGGTTTATGGCACGAGAAATAATGATTCTTAGGAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAGTACATGGAGCACGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAATTGTTATCTGGTCTTGAGCACTGTCACTCACGGGGTGTGATGCACCGGGACATCAAAGGATCAAATCTTTTAGTGAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGACTGGCAAATTTCTCCAATTCTGGGAACAAGCAGCCCCTCACTAGTCGTGTAGTCACGTTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTATGGTCCATCCGTGGATATTTGGAGTGTTGGATGTGTATTTGCAGAATTACTAATTGGGAAACCTATACTTCAGGGGAGAACCGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCGCCCGAAGAATACTGGAAAAAGACCAGACTTCCTCACGCAACATTGTTCAAGCCACAACAACCATACGATAGTTGCCTCCGACAGACATTTAAAGATTTTCACGTATCCAGTGTAAATCTTCTACAAACTCTTCTTTCTGTTGAACCAAGCAAACGTGGGACTGCCTCCTCTGCTCTCTCATTAGAGTATTTCAAAACAAAACCTTATGCATGCGACCCATCAAGCTTACCAATATACCCACCTAGCAAGGAGATTGATGCGAAACATGAAGAGGAGTCAAGAAGCTATTATAACATGAATACCAAAGGTTCAATTCCAGTTGCAATGGAGGCAGGAATACTAAATCCACCATCTCTGAAGAGTATTGTATTTGTTCTTCCGGGATATATCTTTAAGAAAAAAATTGGTGGGCGAGCTGGTGTACCAGAATCAAGAAAACCATCAAGAAAGCCACTAGCACTGAGTAAATTAGCCCCAGCAGAGGATTTGACAACTCAAACTCAGACTTCCCAAAAGATTGATGATAGATGTATCCACACACTTAAAGAGGAGAACACTAATGCAGGTGAGGGGACACCAAAGCAGTGTGGTGGTAAACCAGACGATGATTCCCATGTGAAGAAGGCATCTCAAGTAGATATTCCCTTTCCTGGGCCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCTAAAAGGCGTAGAGATGACACTTCAATTAGAACTCATAGTCGTTCTATTTCTAGAGGGTACATCTTTAATTCATTGGAAACTTCTACAATAAATTCAAGGAATAATTCTGAATCCAGAAACTACGAAAATAATGATTTTTTCGGGACATGCACCAATTCAAGGGGCCATGACCTACTTGAAATTTCTAAGCTTGCCATGAAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTGAGGAGTACCATTCACAAGAACTTTCCATGGCGCTTTATAACAGGCAAGACTCATTGTCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGGAGAAAAGGTAGAGTTTTCAGGGCCTCTGCTATCTCAAATGCACACAGTGGATGAGCTCTTAGAAAGACATGAGCGTCACATCCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAGTAA 2205 0.4422 MSRELKRTKLTGCVVGRKVKGLGVIWCVRRNVMGCVVAKQAVSVTPAIEHSVESDKNRKKKTESARSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLRADAYEKLEKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRQTFKDFHVSSVNLLQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPIYPPSKEIDAKHEEESRSYYNMNTKGSIPVAMEAGILNPPSLKSIVFVLPGYIFKKKIGGRAGVPESRKPSRKPLALSKLAPAEDLTTQTQTSQKIDDRCIHTLKEENTNAGEGTPKQCGGKPDDDSHVKKASQVDIPFPGPLQVSKSSGFAWAKRRRDDTSIRTHSRSISRGYIFNSLETSTINSRNNSESRNYENNDFFGTCTNSRGHDLLEISKLAMKNQWSKFDRPDSFDTEEYHSQELSMALYNRQDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKQGK 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00822 734 MobiDBLite consensus disorder prediction 507 521 - -
Vimu7g00822 734 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Vimu7g00822 734 PANTHER CELL DIVISION PROTEIN KINASE 125 415 - -
Vimu7g00822 734 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
Vimu7g00822 734 FunFam probable serine/threonine-protein kinase At1g54610 114 209 - -
Vimu7g00822 734 SUPERFAMILY Protein kinase-like (PK-like) 120 418 IPR011009 -
Vimu7g00822 734 FunFam probable serine/threonine-protein kinase At1g54610 210 450 - -
Vimu7g00822 734 MobiDBLite consensus disorder prediction 484 565 - -
Vimu7g00822 734 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00822 734 MobiDBLite consensus disorder prediction 48 82 - -
Vimu7g00822 734 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00822 734 CDD STKc_CDK9_like 127 411 - -
Vimu7g00822 734 MobiDBLite consensus disorder prediction 51 68 - -
Vimu7g00822 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Vimu7g00822 734 SMART serkin_6 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00822 734 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00822 Vimu-Chr7 8139320 8145658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00822 119 441 Core Cell Cycle Gene Families AT5G10270 51.327 9.99e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu7g00822 Pkinase 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00822 - - gmx:100784406 1165.21