Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00813 ATGGATGCTGATACTGAGACTGAGGAACTTATTAATTTGAACAACAAAGCAAGTAACTGTGGTGGGAATAATAGTAAGAGTGGCGATGGCTTTATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGACAACGATTCCAAGAGTTCTGAAGAGGTTTTTACTCTTCTTTTGAGGTGTTCTTATCAGGTTACTTCAGTAAAATCGGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGACATGATACTAGTTGAAGTTGACCTTCCGGTGAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTATGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTAAAGTGCTTGAGGCTTGGGGCAGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTGGAGAACAACATCTTGAATTATGAGTTTGAACTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAAAGAAGCACTAATCCAGAGACTGTAGTATCAATCCAACAAGAAGAAGAGAAAGTGTTGATACGAGCCTTGCATAGACCCAGCAATGCAGAAAAGGAGGTTAGTATTGCCGCCACCACCCATGTTGTGGTGGAGCTTCCCAGTGCTCTTGTCTCAGAATATCAGCCTGATGTTCCTGGAATAAGTGATCGCAGAACAGGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAGCACTGAAGAGCAACATTGAAGAGACTGCTCATGTTGACAATACTACTACAGAAGTTAGGGTGGAACATGTGAATCAAGCATGTGGTGAACAGGATGGTAATGACCTTAATACACATGAAAATGGAGAAATGTTTGAAAATCATTCACAAGATGACTTACGCAGCAGCAACAGTATCCACGATTCTTTTTCTATTGAGAGATCTTGTACTCCACCTGCATCTATGGAAGTTTCTCAGCAAAAGCATTACAGGGAAGAACATTCTCGGGGAGTAGTGCATCCAATAAATGGAAGTCATGGTTCCGATCCTGCTCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCATCATCAGCACAAATGTATCAAAAGAATATCCAGGACCTGCAAAGTCATTCTGGTTCTTCCGTGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCAAGGAAGTGGGATGACATCCTTCCCATATTATCCAATGAGCATTTGCTTACAACCTGGTCAGATTTCTACAACTCATTCTTGGCCATCGTTAGGAAGTTCAAGTTCATGTGAAGTGAAATCAAACAAGGTTGATAGGAGAGAAGCAGCGCTGATGAAGTTTAGACAGAAAAGGAAAGAACGCTGTTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTTGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTGTTGATGTGGATCTTAATGGACAACCTACTTCCACTGATTACGATGAAGAGGAGGAAGACAACCATGTAGCAAGAGATTTCTCTCCTGAGGATGCTTGA 1719 0.4142 MDADTETEELINLNNKASNCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVKSARQVIDALNAEGQYIDMILVEVDLPVKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYEFELVASDPSDANTNSTTLFSDDTDDKSKRSTNPETVVSIQQEEEKVLIRALHRPSNAEKEVSIAATTHVVVELPSALVSEYQPDVPGISDRRTGHFSSGPKKSELKIGESSAFFTYVKATALKSNIEETAHVDNTTTEVRVEHVNQACGEQDGNDLNTHENGEMFENHSQDDLRSSNSIHDSFSIERSCTPPASMEVSQQKHYREEHSRGVVHPINGSHGSDPAQHAYPYYISGVVNHVMMPSSAQMYQKNIQDLQSHSGSSVIAQYNHLPQCPPQGSGMTSFPYYPMSICLQPGQISTTHSWPSLGSSSSCEVKSNKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVDVDLNGQPTSTDYDEEEEDNHVARDFSPEDA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00813 572 MobiDBLite consensus disorder prediction 542 572 - -
Vimu7g00813 572 SMART REC_2 37 152 IPR001789 GO:0000160
Vimu7g00813 572 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Vimu7g00813 572 Pfam CCT motif 495 537 IPR010402 GO:0005515
Vimu7g00813 572 Gene3D - 37 249 - -
Vimu7g00813 572 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Vimu7g00813 572 MobiDBLite consensus disorder prediction 257 276 - -
Vimu7g00813 572 ProSiteProfiles CCT domain profile. 495 537 IPR010402 GO:0005515
Vimu7g00813 572 MobiDBLite consensus disorder prediction 185 207 - -
Vimu7g00813 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 220 IPR045279 GO:0009736
Vimu7g00813 572 SUPERFAMILY CheY-like 35 163 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00813 Vimu-Chr7 8061661 8070197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00813 26 571 Response Regulator Gene Family AT5G61380 49.363 3.06e-177 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vimu7g00813 Response_reg 1.6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00813 K12127 - gmx:100786522 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00813 7 8061661 8070197 Vimu7g00813 7 8061661 8070197 ECH