Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00806 ATGGAAAAGCTTTCGCTTCTTTCTAAGGACGACCATCACATGGATTTGCCTCCGGGCTTTCGTTTCCACCCCACTGATGAAGAGCTTATAACCCATTACCTCTACAAGAAGGTCATTGACACCAACTTCTGCGCTCGGGCCATCGGAGAAGTCGACCTCAACAAGTCTGAGCCTTGGGATTTGCCATGTCAGTCAAAACAATCCTATATCTTCCCTTCTTCTTCTTCTTCTTCTTCTTCACTTTTCTATAAAATTAAAACTTTCACCTTTTTGCAGGGAAAGCTAAAATGGGAGAGAAGGAGTGACAGAAAATACCCTACTGGCTTGAGAACCAACAGGGCCACCGAAGCCGGTTACTGGAAAGCCACCGGGAAAGACAAAGAGATTTTCAGAGGCAAATCTTTGGTCGGAATGAAAAAGACTCTTGTTTTCTACCGAGGTCGAGCGCCCAAAGGAGAGAAAAGCAACTGGGTCATGCACGAGTACAGACTTGAGGGGAAATTCTCTGTTCACAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGATCTGCAGGGTGTTTCAGAAAAGTTCAGCCGGGAAGAAAACTCATATTTCTGGGATAATGAGGTTGGACTCTTTGGCCAATGAATTGGGTTCTTCTGCTCTTCCACCCCTTTCGGATTCTTCACCTTCTATTGGCAACACTAAACCGCTCAACGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGACGGGGTCTTTGATTCCCTCAATAACTCTATTTATGGGGTTTCTCCAAATAATCCTTTGGACTTTCTTCCCAGAATGCCACCTTCTACCTCGTTCTACTCTGCTCAAGGTGTTCAAGCTGTGCCTAATTTGACATTTCCCGGTTCTGTTTACTCTCTGCAGGACCACACCAATCTGAGAGCCATGTGTGAAAACAATGGTGGTGGTTACAAGTCAGAGAGGGACATGATCAGTGTCTCACAGGAAACGTGTCTTACCACTGATATCAATCCTGAAACCTCTTCAAATTTTGATATGGGTAGGAGGCACTTTGAGAATCAGAATCATCCTTCTGTTTCTGTTGCTCCAGTGGATCTTGATGGTTTGTGGAATTACTGA 1131 0.45 MEKLSLLSKDDHHMDLPPGFRFHPTDEELITHYLYKKVIDTNFCARAIGEVDLNKSEPWDLPCQSKQSYIFPSSSSSSSSLFYKIKTFTFLQGKLKWERRSDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSLANELGSSALPPLSDSSPSIGNTKPLNESAYVPCFSNPIDVQRNQDGVFDSLNNSIYGVSPNNPLDFLPRMPPSTSFYSAQGVQAVPNLTFPGSVYSLQDHTNLRAMCENNGGGYKSERDMISVSQETCLTTDINPETSSNFDMGRRHFENQNHPSVSVAPVDLDGLWNY 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00806 376 Gene3D NAC domain 25 193 IPR036093 GO:0003677|GO:0006355
Vimu7g00806 376 SUPERFAMILY NAC domain 13 189 IPR036093 GO:0003677|GO:0006355
Vimu7g00806 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 275 - -
Vimu7g00806 376 ProSiteProfiles NAC domain profile. 16 189 IPR003441 GO:0003677|GO:0006355
Vimu7g00806 376 Pfam No apical meristem (NAM) protein 17 164 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00806 Vimu-Chr7 8014503 8015738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00806 14 376 NAC Transcription Factor Family AT5G07680 52.617 2.38e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu7g00806 NAM 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00806 - - gmx:100798002 589.726