Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00805 ATGGTGCCAACGATTGGGGTCTCCCAAATCTCACCCTTCATATTGATGTTACGAGCTTGGATGGGAAGGGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTGTGCGACATAGACATTCTCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGTAATATTGAGGAAGTTGTTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGTCTTGAAGCTTTAAAGAAAACCTTCAAGAAATTGGATCATGACGTAAAAATACAGGATTTCTTAGGTTCAAGCAGCCAAACAGTGGAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAGCTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATGTAGAGAAGATCAACAATTTAGAGCATCTGAGGCAAATGGAAGAGTCGATACGAGAATCAATAAATCGAGTCGGCCTGCAGAAGGAAAATTTAGGGAAGCACCAACTCATTTCACTTGAATGTGCTAACCAGGAAGGGATGACTTTACCCTTGATGATGGCAAGTCTACAAGAATCTCAACCACTGTCTTGGCTTTTGAATAATGATAATCATCAATTGTTGTTACCAAATGAACCAAAATTTCTACCATTCAGTGATAATACCAATAGAGAAGCTGAGTGCTCCACTGACATTTCACTTCCAAGCTATTCAAATTATATTGGGAGCAACAAACTTGAAGTTGGTAGCTCTCCCCAAGTGACTTTGGGTCAAGGAGGTGGTGCAATGAACGAGCTAAATGGAACTACATACTTAAATGTACAACGTTGTGACCAATTTACGTTCCCTCCACAAGATATTGAGGAAGCAAAACATTTACCTACATTGAACAATAAATCAAACACCGTGGATTACCAAGTTAACAACTTTGATCTTTCCGGTTCACTATTTGAAAATGGACATCAATTTTGGAATTCTGCTTCAGGGTCTTGTAGTATTGCCATGTATAATGAGAACGGCTACCACAGGAAGCCAGTTGATGTAGTGACCCAAGAAGTTCAAAAGATGCTTTCCTACAAGAATGAAAAGTGGTTGTGCTATTCTCAGCAAAGGGCCACCTGTGGTGACGAGTGGTCATGGAATCACAGCTTGAAGACAGTGGCAGAGTTTGAGAAATGGAAAGAAGCCATAAAAAAGGACTTTGGGTTATCCTTCAAAGAGTACCATGCGAAGATTGCGGCCACCACTCACCGTTGCTCACACCTTGAGATTCCTAATGTTGTAGGAAAGTTACCATAA 1377 0.3994 MVPTIGVSQISPFILMLRAWMGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVVAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELSHQVRVLQAQLTEVHQRLSYWNNVEKINNLEHLRQMEESIRESINRVGLQKENLGKHQLISLECANQEGMTLPLMMASLQESQPLSWLLNNDNHQLLLPNEPKFLPFSDNTNREAECSTDISLPSYSNYIGSNKLEVGSSPQVTLGQGGGAMNELNGTTYLNVQRCDQFTFPPQDIEEAKHLPTLNNKSNTVDYQVNNFDLSGSLFENGHQFWNSASGSCSIAMYNENGYHRKPVDVVTQEVQKMLSYKNEKWLCYSQQRATCGDEWSWNHSLKTVAEFEKWKEAIKKDFGLSFKEYHAKIAATTHRCSHLEIPNVVGKLP 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00805 458 Coils Coil 97 117 - -
Vimu7g00805 458 CDD MADS_SRF_like 22 104 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vimu7g00805 458 Pfam Sieve element occlusion C-terminus 369 457 IPR027944 -
Vimu7g00805 458 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 75 IPR002100 GO:0003677|GO:0046983
Vimu7g00805 458 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Vimu7g00805 458 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Vimu7g00805 458 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Vimu7g00805 458 SMART madsneu2 21 80 IPR002100 GO:0003677|GO:0046983
Vimu7g00805 458 Gene3D - 34 116 IPR036879 GO:0003677|GO:0046983
Vimu7g00805 458 FunFam Agamous-like MADS-box protein AGL30 34 116 - -
Vimu7g00805 458 SUPERFAMILY SRF-like 22 115 IPR036879 GO:0003677|GO:0046983
Vimu7g00805 458 Coils Coil 134 154 - -
Vimu7g00805 458 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 223 - -
Vimu7g00805 458 ProSiteProfiles MADS-box domain profile. 21 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00805 Vimu-Chr7 7986234 7995292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00805 21 293 Type I MADS-box Gene Family AT2G03060 51.228 7.46e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu7g00805 SEO_C 6.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00805 - - pvu:PHAVU_003G189100g 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00805 7 7986234 7995292 Vimu7g00805 7 7986234 7995292 ECH