Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00797 ATGATCATGGACTCTCACCCTCTTATGAGTTGGAGCTCTTATTATCAGATAGAAGAAAAACCATTGCCATTTACGTTTTCTTACAGCGAGAACACTGAAGTGTATCCTCCTCCACTACACGATTTACCAATCCAAGACTGCCATCACGGTGCTGTTCCTCTTACGGAGTATTACCCTTCTGATCCTTTATACGAAACGCTCGCCATCGAACCAACACCGACCCTGCGAGCAGACTGTGATTTTTATGATATATCTAAGGGGCTTTCTGTGTGGAACGAAGTGAATGCTGTGTTTGATTCGGAAGTCGATTTTTTATTTCGTAACAAGGAAGAAAGTTTGAAGGAGATGGTGGATGATAGCAAGGTTAACGAAGGGAGAGAAGAAATAACGAACCCTAGAAATAGCAGAAAGTTATCAAGGGAGACGATATCTGAGTACTTTTACATGCCAATAACACAAGCTGCCAGAGAACTTAATGTGGGGCTTACATTATTGAAGAAAAGGTGCAGAGAGTTGGGTATTAGAAGGTGGCCCCACAGAAAGCTGATGAGCTTGCAAACTCTGATAAATAATGTACAGGAGCTACTGAAAGAGGAGGGGCCGGAGAGTGAAGAGAAGTTGAGATTTGCCATTGAGACATTGGAAAATGAAAAGAAGCTTTTGGAGGAAATGCCAGATATTGAACTGGAAGATAATACAAAAAGACTTAGACAGGCATGTTTCAAGGCCAACTACAAGAAAAGGAAGCTAGGACAGAGGGAACCAGACTGTTCTTCTTGGAGTGGCGCAATGTCAGAGTATAACGAAAGTGAAGAAGAACTGGATATGAAGTATCTCATTTCTCAGTTAACTTAA 855 0.4164 MIMDSHPLMSWSSYYQIEEKPLPFTFSYSENTEVYPPPLHDLPIQDCHHGAVPLTEYYPSDPLYETLAIEPTPTLRADCDFYDISKGLSVWNEVNAVFDSEVDFLFRNKEESLKEMVDDSKVNEGREEITNPRNSRKLSRETISEYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELLKEEGPESEEKLRFAIETLENEKKLLEEMPDIELEDNTKRLRQACFKANYKKRKLGQREPDCSSWSGAMSEYNESEEELDMKYLISQLT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00797 284 PANTHER PROTEIN RKD4 131 252 IPR044607 GO:0003700
Vimu7g00797 284 ProSiteProfiles RWP-RK domain profile. 120 205 IPR003035 -
Vimu7g00797 284 Pfam RWP-RK domain 138 185 IPR003035 -
Vimu7g00797 284 Coils Coil 204 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00797 Vimu-Chr7 7936950 7938109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00797 135 255 AtRKD Transcription Factor Family AT1G18790 72.951 2.31e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu7g00797 RWP-RK 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00797 - - gmx:100788666 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00797 7 7936950 7938109 Vimu7g00797 7 7936950 7938109 ECH
Vimu7g00797 7 7936950 7938109 Vimu10g01052 10 9807364 9808555 PCT