Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00794 ATGAACATGGGGAGGCCACCTTGCTGTGACAAAATTGGAATTAAGAAAGGACCTTGGACTCCAGAAGAAGATATCATGTTGGTGTCTTACATTCAAGAACATGGACCAGGAAATTGGAGATCAGTTCCCACTAACACAGGTTTGATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCTGGTATCAAACGAGGTAATTTCACCGAGCATGAGGAGAAGATCATAATCCACCTTCAAGCCCTTTTGGGCAACAGATGGGCTGCTATAGCTTCGTATCTTCCAGAAAGGACAGACAATGACATAAAAAATTATTGGAATACCCATTTGAAGAAGAAGATGAAACCAAGTGACCAAAACGAAGAGGGCATGGAACAAGAAGGACATTTTTCTTCTTCTTTACATCCAAAGGGTCAGTGGGAGAGAAGGTTACAAACAGATATAAAAACAGCCAAACAAGCCCTGTGTGATGCTTTGTCCCTTCACACGACACCAGCAACACATGCTGTGCCTGAGACCAAGCCTTCTTCAACATCTCATCAACCCTACAGCCACGCCTCATCTTCATATGCATCTAGCTATGAAAACATTTCCCGGTTGATGGAAAACTGGATGAAAACTCCAAACTCACACGAGACAAATTCACTAGGGGATTATTCCTTCAATAACATGCCCAATATTAATACACCAAGATCCAGTTCTAGCGAGGGAGCACATAGCACCACTAATACCACGTGTGCACAAGATCATGTTTTTGACTTGTTCACCTTCAACTCTTCCACAAACTATGGTCCTGCCTCTCAGACTCAAGTGCCTCTTACCATGATAGAGAATTGGCTTTTCGAGGATGGGGCTTCTCAGTCTCATGAAGATCTGATGAGCATGTCGCTGGAAGAAAGTACTTCAGGTTTGTTTTAG 930 0.4323 MNMGRPPCCDKIGIKKGPWTPEEDIMLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKIIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKMKPSDQNEEGMEQEGHFSSSLHPKGQWERRLQTDIKTAKQALCDALSLHTTPATHAVPETKPSSTSHQPYSHASSSYASSYENISRLMENWMKTPNSHETNSLGDYSFNNMPNINTPRSSSSEGAHSTTNTTCAQDHVFDLFTFNSSTNYGPASQTQVPLTMIENWLFEDGASQSHEDLMSMSLEESTSGLF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00794 309 SMART sant 68 116 IPR001005 -
Vimu7g00794 309 SMART sant 15 65 IPR001005 -
Vimu7g00794 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Vimu7g00794 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Vimu7g00794 309 FunFam MYB-related transcription factor 15 68 - -
Vimu7g00794 309 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vimu7g00794 309 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vimu7g00794 309 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vimu7g00794 309 CDD SANT 71 114 IPR001005 -
Vimu7g00794 309 Gene3D - 70 138 - -
Vimu7g00794 309 MobiDBLite consensus disorder prediction 172 191 - -
Vimu7g00794 309 MobiDBLite consensus disorder prediction 122 142 - -
Vimu7g00794 309 CDD SANT 18 63 IPR001005 -
Vimu7g00794 309 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vimu7g00794 309 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vimu7g00794 309 Gene3D - 15 68 - -
Vimu7g00794 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00794 Vimu-Chr7 7878704 7879973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00794 3 309 MYB Transcription Factor Family AT5G62470 50.000 6.26e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g00794 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00794 K09422 - gmx:100799402 463.381