Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00788 ATGGAAGGAGGCGACGATCTCCACCATCATCACCACCACCACCGTCAGAACTTCCCATTCCAGCTCCTCGAGAAGAAAGAAGACCAAGAAGCCGCCTCATGCTCCACCTCCTCCCCCTACCCTTCCCTAGCAATCTCCGCGGAACCCACCACGTCCAATTCCACCCGATCCAACCAGCTCGCGGCGACTTCGGACCCTCCAAACAGACAAAAGCCCCCACCCAAACGCACGTCGACCAAGGACCGGCACACAAAGGTGGACGGTCGTGGCCGCCGCATCCGAATGCCCGCTCTCTGCGCCGCTCGAGTCTTCCAGCTCACGCGCGAACTCGGTCACAAGTCCGATGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCGTCATCGCCGCCACCGGGACCGGAACCATCCCCGCCAACTTCACCTCTCTCAACATCTCCCTCCGCAGCTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGGTCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACGGCGCACCTTGTTCCCCGGCATCGCCTTATCCTCCGACACCAACCCCACCAACACCTCCACACTTCTCAATTTCCAATCCAACAACCTCAACACCTCCATGCTCCAGGCGAAGCCCGAAGCTCCCTCCTCCACCTTGGACTTGTCCGACACAAGCGCGGAGGAATCAACCCTAGGCCGGAAAAGAAGACCGACGGAACAAGACCTATCCTCCTCCTCGCAGCACCAAATGGGAAGTTATCTCCTCCAGTCGAATGCAGGCACGATTCCTGCGAGTCACGCCGCCAACATATGGATGGTGGCCAATTCAAACACCAATCAAGTCATGAGTGGCGATCCCATATGGACCTTCCCTCCGGTTAACAACAGTGCCTTGTATAGAGGCACCATGTCCAGTGGGTTGCATTTCATGAACTTCCCCACGCCCATGGCACTTTTGCCGAGTCAGCAACTGGGGTCTTCTGGGATTGGTGCTGTTGGGGGAAGCAGTAATAATAATAGTAATAACAACGGCAATAATAATATGAATGAAGGGCATTTGAGTATGCTTGCGGGGCTCAGTCCTTATCGCCCAGTTATCGGCGTTTCTGAATCTCAGGCAAGCGGCTCGCAATCGCATCGTGGAGGTGCCGCAGATGATCGCCATGATACCACCAGTCACCACTCCTAG 1197 0.5723 MEGGDDLHHHHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPTTSNSTRSNQLAATSDPPNRQKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIALSSDTNPTNTSTLLNFQSNNLNTSMLQAKPEAPSSTLDLSDTSAEESTLGRKRRPTEQDLSSSSQHQMGSYLLQSNAGTIPASHAANIWMVANSNTNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSSNNNSNNNGNNNMNEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGGAADDRHDTTSHHS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00788 398 MobiDBLite consensus disorder prediction 373 398 - -
Vimu7g00788 398 MobiDBLite consensus disorder prediction 17 31 - -
Vimu7g00788 398 MobiDBLite consensus disorder prediction 230 244 - -
Vimu7g00788 398 MobiDBLite consensus disorder prediction 213 251 - -
Vimu7g00788 398 MobiDBLite consensus disorder prediction 384 398 - -
Vimu7g00788 398 MobiDBLite consensus disorder prediction 213 229 - -
Vimu7g00788 398 Pfam TCP family transcription factor 77 245 IPR017887 -
Vimu7g00788 398 MobiDBLite consensus disorder prediction 1 88 - -
Vimu7g00788 398 MobiDBLite consensus disorder prediction 74 88 - -
Vimu7g00788 398 MobiDBLite consensus disorder prediction 32 66 - -
Vimu7g00788 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 350 IPR005333 GO:0003700
Vimu7g00788 398 MobiDBLite consensus disorder prediction 333 356 - -
Vimu7g00788 398 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00788 Vimu-Chr7 7824496 7825692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00788 70 392 TCP Transcription Factor Family AT3G47620 44.952 5.94e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu7g00788 TCP 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00788 - - gmx:100790785 601.282