Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00782 TTGAGAAGCAGCAAGAGAAGAGCCATGGTGCACGTTTCCTTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCTCGTCGTCCATACGAAAAGGAACGTTTGGACGCCGAGTTGAAGCTGGTTGGAGAGTACGGGCTTCGCTGCAAGAGGGAGTTGTGGAGGGTTCAGTACGCCCTCAGCCGTATCCGTAACAATGCCAGGAATCTGTTGACACTGGATGAGAAGAACCCACGCCGAATTTTCGAGGGTGAAGCGCTTCTCCGAAGAATGTTCCGTTACGGACTTCTCGACGAGACGCAGAACAAGCTCGATTACGTGTTGGCCCTCACCGTCGAGAACTTTCTCGAACGCCGCCTCCAAACCCTCGTTTTCAAGTCTGGCATGGCCAAGTCCATTCATCACGCCAGAGTCCTCATCAGGCAGAGGCACATCAGGGTTGGGAGACAGGTGGTGAACATTCCATCATTCATGGTTAGGGTTGATTCTCAGAAGCACATTGACTTCTCACTCACGAGTCCACTTGGTGGTGGTCGTCCTGGACGCGTGAAGAGAAGGAACCAAAAGGCTGCTGCTAAAAAGGCCGCTGGTGGAGATGGAGACGAGGAGGATGAAGATTAG 618 0.5259 MRSSKRRAMVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQKAAAKKAAGGDGDEEDED 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00782 205 ProSitePatterns Ribosomal protein S4 signature. 115 139 IPR018079 GO:0019843
Vimu7g00782 205 FunFam 40S ribosomal protein S9 116 196 - -
Vimu7g00782 205 NCBIfam 30S ribosomal protein S4 19 174 IPR005710 GO:0003735|GO:0006412|GO:0015935
Vimu7g00782 205 MobiDBLite consensus disorder prediction 169 205 - -
Vimu7g00782 205 Pfam S4 domain 117 160 IPR002942 GO:0003723
Vimu7g00782 205 CDD S4 117 161 - -
Vimu7g00782 205 Gene3D - 116 173 IPR036986 GO:0003723
Vimu7g00782 205 PANTHER 30S 40S RIBOSOMAL PROTEIN 15 192 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vimu7g00782 205 SMART Ribosomal_S4_2 16 116 IPR001912 GO:0019843
Vimu7g00782 205 SUPERFAMILY Alpha-L RNA-binding motif 20 167 - -
Vimu7g00782 205 ProSiteProfiles S4 RNA-binding domain profile. 117 188 - -
Vimu7g00782 205 Pfam Ribosomal protein S4/S9 N-terminal domain 16 116 IPR001912 GO:0019843
Vimu7g00782 205 SMART s4_6 117 188 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00782 Vimu-Chr7 7792706 7793849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00782 9 195 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.979 3.70e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00782 K02997 - gmx:100305663 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00782 7 7792706 7793849 Vimu10g01016 10 9384317 9386187 ECH
Vimu7g00782 7 7792706 7793849 Vimu7g00782 7 7792706 7793849 ECH