Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00778 ATGGGAAATTTCTGTGCTCGGTGCAAGATTGATGGCAATTTGAATCCGCACCCATGTTCTGAAGTTCCCAATAGAAGCACCCAGTTGTTTGTTCATTCAAATCCAAACGGGTATGGATACATTGATGGAGGGAAACCTGAGATTCTCCCTACTCCAAGATATGAAGGAGACATACTTTCATCCCCACATTTAAAACCCTTCACATTATATGATCTTAAGAAGGCCACAGGAAATTTTCAGCCTTATAATCTTATTGGAGAAGGAGGATTTGGAAATGTTTATAAAGGGAGGATTAATGAATCTAAATCCCACGGGGCTACAATTTATGGATCTGGAAGAGATGTAGCCGTTAAGAAGCTTAAGCCTGAAGGCTTTCAAGGGCACAAGGAATGGCTGTCTGAAGTCAATCATCTTGGCCAACTTCACCACCAGAATCTCGTCAAACTAATTGGATACTGCGTGGAAGGAGATAACCGACTTCTAGTGTACGAGTACATGCCCAACGGATGCTTGGAAGATCATATATTTTGCAAAGGCACACAACCACTTCCCTGGGCTACAAGAATGAAGATTGCCACGGGTGCTGCTCGAGGTCTTTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAACATTTTGATAGATTCGGAATTTAATGCAAAACTGTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGGTGATCATTCTTACGTTTCCACTCAAGTTCTGGGTACTCATGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACGTCAAGGTGTGATGTGTATAGCTTTGGGGTAGTGCTATTGGAACTACTATCAGGGCGGCATGCTATTGATAACACAAAATCTGGAGTGGAACGTAATCTGGTAGAATGGGCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATTATGGATACCAGGTTAGAAGGACAATACCCGCAGAAGGCAGCTTATACAGTTGCAATAATTGCCTTACAGTGTATTTCTGATGCCAAGACTAGGCCACAAATGTCTGAGGTTTTGTCTGCCTTGGAACACCTACCAGTCACTAGACGTTCAGCTAGCCCCACACAAACCCATACATAA 1131 0.435 MGNFCARCKIDGNLNPHPCSEVPNRSTQLFVHSNPNGYGYIDGGKPEILPTPRYEGDILSSPHLKPFTLYDLKKATGNFQPYNLIGEGGFGNVYKGRINESKSHGATIYGSGRDVAVKKLKPEGFQGHKEWLSEVNHLGQLHHQNLVKLIGYCVEGDNRLLVYEYMPNGCLEDHIFCKGTQPLPWATRMKIATGAARGLSFLHDSKQQIIYRDFKASNILIDSEFNAKLSDFGLAKAGPTGDHSYVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAIDNTKSGVERNLVEWARPYLGDRRKLFRIMDTRLEGQYPQKAAYTVAIIALQCISDAKTRPQMSEVLSALEHLPVTRRSASPTQTHT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00778 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vimu7g00778 376 Gene3D Phosphorylase Kinase; domain 1 52 165 - -
Vimu7g00778 376 SUPERFAMILY Protein kinase-like (PK-like) 56 360 IPR011009 -
Vimu7g00778 376 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Vimu7g00778 376 FunFam Serine/threonine-protein kinase BIK1 49 165 - -
Vimu7g00778 376 PANTHER OS01G0588500 PROTEIN-RELATED 57 362 - -
Vimu7g00778 376 Gene3D Transferase(Phosphotransferase) domain 1 166 374 - -
Vimu7g00778 376 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Vimu7g00778 376 FunFam Serine/threonine-protein kinase PBS1 166 376 - -
Vimu7g00778 376 CDD STKc_IRAK 85 362 - -
Vimu7g00778 376 ProSiteProfiles Protein kinase domain profile. 79 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00778 Vimu-Chr7 7758614 7763852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00778 67 362 Glycoside Hydrolase AT3G07070 52.000 1.86e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu7g00778 PK_Tyr_Ser-Thr 8.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00778 - - gmx:100791844 613.994