Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00774 ATGCATGTGCCGGAAACGGGTTTGACCTTAGAACCAACCTCAGATGCTATTCCCAATCGCGATGAAAACCAGGAGGTGGAAAACAAAGAAGCAGAAAATGTTTTACCTGACAATCAAGAAATAGACTTAGTAGGATCTACTAATGAAGAGGATGCATTGGATCCGGAGAAAATGAGGCTGGAGGAAGCAGCAACAAAGGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCCTTGAAAGGCATAATAAGGCTGCAAGCACTCATTCGTGGGCACTTGGTTAGGAGACAGGCTGTTGTTACATTATGCACTATGTATGGTATTGTCAAGTTTCAAGCACTTGTTCGAGGAGGAAGAGTTAGGCAGTCTAATGTTGGTTCTGAAATCCATGAGAAGTACAATATATTGAACTCTCTGCTTTGTACTTCGTCAACTACAATAATGGCATTGCGTTTGCAATATGTTCCGGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCAATTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCAGGATAGTAAGGCTCAAAGAAAGCATGGTAATATTTCAGTTGGAGATACTCAAACGAGTAAGTCAAAACGTACTAACAGGAAGCTTCCTACTTCGAATTTTGACTCAGTCCCAGTGCTAGCAAATCCTGAATTTGATAAACCCAAAAGAAACACAAGGAAAATTCCAAGTCAACCCTCAGATCCCGTGCAGGAAAATCCACAAAATGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGGTTCATAATCCTGTTGCTGAGAATGCTGTTCCTTCAGAAGTTGAAACTGAGATGCCAAAGGAACATTTGGGAAAGGCCACAGTTACCTCATCCCTTGCTGTTTCAGAACAAGAGGTCGTTAGTTTTAATGAGAAGGTCAAGAAGGAAGCAGCATTAACTGTTTCCAGTGTGCAAGATATAGAAACTACTCCAAGACTTTCAGCTAGTAACGAAATGCTTGACACACCAACCAGTAATCAAGTGACTGTGGAATCGAAGCCCTTGACTGAAATTACAACTAAAGATAAAAATATTTCCGATGAAGTAAAAAATGAGCCCATAGATTTGCCAGAGCTTATTTGTAGAGATGAAAATTCTCTCTTGACAAATGGAGATTTGAGTCACAAGGAAGATCCAATAGGCAGTGAAAACCAGAAACCGAACAGAAAAGGCTCTAATGTAGCAAAACAGGAACGTGCAGATAATGGAATACAGAATAGTCCAACATTGCCAAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTAAGGGCACAAGGATCCCCAAGATTTGGACAAGATGGAAGTGAAAGAAACAACCAGACCCGGCGCCATTCTTTGCCATCCTCAACTAACAGCAAAATTAGTTCGCATTCACCCAGGACACACAGACCAGTTCATTCAGGTGGCAAAGGGGGCAACAGAAGTGACAGAACTGTATCATCATCTTCTAGAGATGGGAATGGTATGTGA 1539 0.4191 MHVPETGLTLEPTSDAIPNRDENQEVENKEAENVLPDNQEIDLVGSTNEEDALDPEKMRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCTMYGIVKFQALVRGGRVRQSNVGSEIHEKYNILNSLLCTSSTTIMALRLQYVPGDPNSVLSWLERWSASQFWKPVPQPKKIQDSKAQRKHGNISVGDTQTSKSKRTNRKLPTSNFDSVPVLANPEFDKPKRNTRKIPSQPSDPVQENPQNELEKVKRNLRKVHNPVAENAVPSEVETEMPKEHLGKATVTSSLAVSEQEVVSFNEKVKKEAALTVSSVQDIETTPRLSASNEMLDTPTSNQVTVESKPLTEITTKDKNISDEVKNEPIDLPELICRDENSLLTNGDLSHKEDPIGSENQKPNRKGSNVAKQERADNGIQNSPTLPSYMAATESAKAKLRAQGSPRFGQDGSERNNQTRRHSLPSSTNSKISSHSPRTHRPVHSGGKGGNRSDRTVSSSSRDGNGM 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00774 512 ProSiteProfiles IQ motif profile. 84 111 IPR000048 GO:0005515
Vimu7g00774 512 MobiDBLite consensus disorder prediction 419 435 - -
Vimu7g00774 512 Pfam Protein of unknown function (DUF4005) 418 498 IPR025064 -
Vimu7g00774 512 ProSiteProfiles IQ motif profile. 60 88 IPR000048 GO:0005515
Vimu7g00774 512 MobiDBLite consensus disorder prediction 1 52 - -
Vimu7g00774 512 MobiDBLite consensus disorder prediction 496 512 - -
Vimu7g00774 512 Pfam IQ calmodulin-binding motif 62 81 IPR000048 GO:0005515
Vimu7g00774 512 Pfam IQ calmodulin-binding motif 84 101 IPR000048 GO:0005515
Vimu7g00774 512 PANTHER IQ-DOMAIN 5-RELATED 24 475 - -
Vimu7g00774 512 SMART iq_5 59 81 IPR000048 GO:0005515
Vimu7g00774 512 SMART iq_5 82 103 IPR000048 GO:0005515
Vimu7g00774 512 MobiDBLite consensus disorder prediction 454 481 - -
Vimu7g00774 512 MobiDBLite consensus disorder prediction 18 36 - -
Vimu7g00774 512 MobiDBLite consensus disorder prediction 256 270 - -
Vimu7g00774 512 Gene3D - 57 106 - -
Vimu7g00774 512 MobiDBLite consensus disorder prediction 390 512 - -
Vimu7g00774 512 MobiDBLite consensus disorder prediction 195 226 - -
Vimu7g00774 512 MobiDBLite consensus disorder prediction 184 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00774 Vimu-Chr7 7706716 7713876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00774 24 511 IQD Protein Family AT1G74690 41.698 3.41e-104 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00774 - - gmx:100794636 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00774 7 7706716 7713876 Vimu10g01003 10 9211260 9218586 ECH
Vimu7g03910 7 36639633 36645222 Vimu7g00774 7 7706716 7713876 ECH
Vimu7g00774 7 7706716 7713876 Vimu7g00774 7 7706716 7713876 ECH
Vimu7g03910 7 36639633 36645222 Vimu7g00774 7 7706716 7713876 PCT