Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00757 ATGGACGCTGTGTTTGACCTTTTGCTATTTGATTCAGGTTCGAGATCCATGATGAGCTTCGAAGGAGAAGGAGGGAAGGGGTGTAACGGTTCCTTCTTCCGCGCGTTTGATATAGACGAGAATGGAGATGAGTGCATGGACGAGTACTTTCATCAGCCTGAGAAGAAGCGCCGTCTCTCTGCCAATCAGGTTCAGTTTCTCGAGAAGAGCTTCGAGGAAGAGAACAAGCTTGAACCCGAGAGAAAAACCAAGTTAGCCAAAGACCTTGGTCTGCAGCCGCGACAAGTCGCTATTTGGTTCCAGAACCGTCGTGCTCGCTGGAAGACCAAACAGCTCGAGAAGGACTACGAGCTTCTGCATGAGAGCTATGAGAGTCTCAAGGCCAACTACGAAATCCTCCTCAAGGAGAAAGACAAGTTGAAATCTGAGGTGGCGCACCTGAGTGAGAAGGTGCTTGCAAGAGAGAAAGAAGAGGGGCAGTTGAAGCAGGCCGAAAGTAGAACAAAGAGGTTGCAGGAACAGGATCAGGAACCACCCCAAAAGCCTATACTTGATTCAGTTTCGGAAGGTGAAGGATCCAAAGTGTCTTGTGTTGTTGGGGGTTGCAAACAGGAAGATATCAGCTCAGCCAGGAGTGACATTTTGGACTCCGATAGCCCGCATTACACGGATGGAGTTCACTCGGCGGTGCTAGAGCATGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCGGACATGTCACAAGATGAAGAAGACAACCTCAGCAAGAATCTGTACCCTTCCTACCTCTTTCCGAAACTGGAAGATGCCGATTACTCCGACCCAACGGAAAGTTCTTGTAATTTTGGATTCTCGGAGGAAGATCATGGTCTTTGGAACTGGGAGTACTAA 894 0.4855 MDAVFDLLLFDSGSRSMMSFEGEGGKGCNGSFFRAFDIDENGDECMDEYFHQPEKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYELLHESYESLKANYEILLKEKDKLKSEVAHLSEKVLAREKEEGQLKQAESRTKRLQEQDQEPPQKPILDSVSEGEGSKVSCVVGGCKQEDISSARSDILDSDSPHYTDGVHSAVLEHGDSSYVFEPDQSDMSQDEEDNLSKNLYPSYLFPKLEDADYSDPTESSCNFGFSEEDHGLWNWEY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00757 297 SMART HOX_1 53 114 IPR001356 GO:0003677
Vimu7g00757 297 MobiDBLite consensus disorder prediction 156 176 - -
Vimu7g00757 297 CDD homeodomain 55 111 IPR001356 GO:0003677
Vimu7g00757 297 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Vimu7g00757 297 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Vimu7g00757 297 MobiDBLite consensus disorder prediction 156 189 - -
Vimu7g00757 297 Pfam Homeobox associated leucine zipper 110 151 IPR003106 GO:0006355|GO:0043565
Vimu7g00757 297 Coils Coil 109 174 - -
Vimu7g00757 297 Gene3D - 49 116 - -
Vimu7g00757 297 SUPERFAMILY Homeodomain-like 42 112 IPR009057 -
Vimu7g00757 297 Pfam Homeodomain 55 108 IPR001356 GO:0003677
Vimu7g00757 297 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Vimu7g00757 297 FunFam Homeobox-leucine zipper protein HAT5 48 112 - -
Vimu7g00757 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 194 IPR045224 GO:0003700
Vimu7g00757 297 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00757 Vimu-Chr7 7554424 7555548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00757 13 228 Homeobox Transcription Factor Family AT3G01470 44.091 1.29e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu7g00757 Homeodomain 7.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00757 - - gmx:100799054 504.597