Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00744 ATGGGGCACAAAAAGCGAAACCCTGCGCCGCGCACGAAACAACCCGCGGCGGCTTCTCCGGCGGTGCAATCCGGCGTCGGCGGAGCCGCCAACGGTGCCACCTCGCCGGACGCTGATGCTAGCAATGTTTCCGATCACAAACCACATAACCCTAGCAAGATCGAATTGGCTCCGCCTCTATCCGAGGGTTCTGAGTACTCCACAATCAAGCTCGAATGCGAGCGCGCTCTCACCACGCTCCGCCGCGGGAACCACAACAAGGCAATGAAGCTGCTGCGGGAGATTTGCGCCAGAGAGGAGGGTTCGCCTCACTCCGCGTTCGTCCACCGAGTTCACAGTCTCATGTGTTTCAAAACGGCGACGATTATCACCGACCCTAGTTCGAAGCAGCGGCATTTGAAGAACGCGCTCGAGTCAGCGCGCCGCGCGGTGGAGCTTATGCCGAATTCTGTTGAGTACGCGCATTTCCGTGCCACGGTAATGTTGGAGGCGGCAACTGAAGGTAAAGATTACGAGGATGTGGTGCATGAGTGCGAGAGGGGGCTGGCCATCGAGAACCCCAGTGATCCTGCCAAGGAGACGTTGCAGGATGAGAGCGAGCAGAAAGCATCATCTACCGAGGAGCGTATTGCGCATGTGCAGAATGAGTTGAGACAGCTTATTCAGAAGTCGAATATAGCTTCCTTGTCGTCTTGGATGAAGAATTTGAGTAACGGGGAGGAGAGATTTAGGTTGATTCCGATAAGGAGGACCCCGGAGGACCCGATGGAGGTGAGGCTGGTTCAAACTAGAAGGCCTAATGAAATCAAGAAGGTAACCAAGACGCCCGAAGAAAGACGTAAGGAAATTGAAGTGCGAGTGGCTGCTGCCAGGCTTTTGCAGCAGAAGTCAGAGGCACCACAATCTCCGAATGAAGGAGATAGGGATGACAGACCGTTGGATTCATCTGGAGGATCTGGTCAGAGGATTGGTGATAGGAGAAGGCATGGAAATGTGAAAAAGAGTGGCTTTACAGCGGAAAGGATGAAATGGGTACACTCTTTTTGGAATTCGGTTAGCATGGATAGGAAGAAGGACTTTCTTAGGGTTAAAATTTGTGATCTTAAGTCGCACTATGGGTCTTCGAAGGATACTTTGCCGAATGATATCTTGTCAGAGGCTTTGTCTTATGCCGAGGCTAATAAAACTTGGAAATTTTGGGCTTGCTGCAACTGTGAAGAGAAACATTCCAACCCGGATTCTCACAGGCATCATGTTGTGCAAGAGCATATGGGGAGTCTGTCGCCACAGATGCAGAGACTTCTGCCCCAAAATGTGGATAGTGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGATGTCTTAGCTGCAGTTAGAATGCTCGATAATAAAGCAAGGTTCAAAAGTCCATCACTTCCTGAGGATTTGTACTTGGATCATCATACTCTGGACTATAATGTTTGTTTTAAAGAAGCAAGCAGCTCTTACATTGAGAAGGAAAGTTCAGGGGACACTCTTCGTAATTGTTTGGAAGAATGCAATAACAATTGTAAAATTATAGAAAATGATGTAAGAGAAGGTGTTGAAGACCAACTATCTGTGGTTGATCGCATTATTGATTGTTGGCCAGTATCTGATGATCCTGAGCGTGCAAAACTTCTGGGAAAAATTCATGCCATGTTTGAGACTCTTATCAGGCATAAATGTCTTGCTGCTAGTCATCTGAACAAGGTCATACAATTTACTATGGGTGAGATACAGGGTCTCGCTGCTGGTTCGCAACTTCTAAATCATGGGGTGGACCAAACACCAATGTGCATATGCTTTCTAGGACCTTCACAGCTTAAGACAATTTTCCAATTTCTGCAGGAAATCTCTCACGCATGTGGGTTGGCCAGAAATGCTGATAAAGGTAGTAGTCCCACAAATGATTCGCTGAATATCAGTCAGGGTCCCGAGATTAAAGACAAGATTGTACTCGATGGAGATGCATCACGACTCCTACTGGATGAGTGTTTACTGCAAACACAAGTCATTGCTGGTACAAATCAGGGGTCTGTCTTGGATGATGTGACCACCCCAAGGTCTCCAGATGGAATTTCATGCTATAACAATGCTTTGCTATCCTGGATATTTTCAAGTTCCCCTATTGGAGATCAAGTGACATCATGGCTGCGGATCAGAGAAGATAAAATAAATAAAGGGAAGGAAATTGTCCAGATGCTTGAGAAAGAGTTTTATCACCTACAGGGACTATGTGAGAAAAAGGGTGAGCGTTTAAGTTATGAGGAAGCACTGCAAACAGTAGAGGATCTATGTCTTGAAGAAGGTAAGAAGAGGGAAACTCTTGGGGAATTTGTTCAGCGAAGCTATGAATCTGTCTTAAGAAAAAGAAGAGAAGAGCTCATTGAGAGTGAGAACGATATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGGAATGTTAATCAATTTGGTTACAAGGAAGCGTATGCTGGTGTGACTTCTCAATTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGACTATTTGCATCAAATGGATGGCTGCATAGAAAATGCTATTCAGAAACTGAAGGAACATTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGGAGTGTCACAGAGATGCAGCAATTGGAATTCAAGCTTGGGCCTATTTCTGCTAATGATTATCGAGCAATATTAGTGCCTCTAGTGAAGTCGTACCTAAGGGCACTTTTGGAAGATTTGGCTGAGAAAGATGCGAGAGAGAAGTCTGATGCTGCTAGTGAAGCATTTTTGGCCGAACTTGCTCTAGATTCCAAGAAGACTGTTAAAAGCGGAAGTGAGAACACAAAACATGTCGAGAAAACAAAAGATAGGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATTTGAAGGCCTCGGGTGATCATGTGCAGTTCTCAGTGGGATCTACAATTCCGGATTCCAATCTAGTTGCACCTGAAAGTGACTTCCTAGATCATGAGGTTGTTTCTATGAATGATGATGACTTGGAACAACTCGAAGAGGAATTTAGACGTAAAATTGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAGTTCCAGCGAAGGATAGAAAATGAAGCCAAACAGAGGCATCTTGCAGAGCAACAAAAAAGGTCATCTGGGTTGTACTTAGAAGTGGAAGAAGATCTTCAAGATTTTCAGACAAAGGCAGATATGGGTTCCCCAGATTCATACAAACATGTAAGAGAAACTATGCAAATAGGAATCTCTCTATTTTTAGTTTCTCCTGCTTCATTTAGGGAGACAGAAGTTGGGGTGGTCATTAATCTTGCTGTTACTTGGTTTGCACGGTTACCAGACCAGTTGGTACAGGATAATGGATCCCGAAGTAGTCTGGATGGTGTGCTTATGGCCACAGCAAACGGTTCCATTTATTTGCATCAGTCAAAAGTTAAACAAGCAGATTTGCCTAATGGAGTTATTCGAGAGAATGGTCTACCTGTGGCTGATCGGCGCACTGGAAAAAAGCCTAGACGGAGGAATTCCTCCAGACCAGTCGATGGAAAGATTGAATCTTTTTCATCAGAAAAAGAGAACACCGAGGAGACACATCCTGAGTCTCTCTTGAGAGAGAAATTTAAATTTAATAACAGTCAAGTCAATAATAATGTGTGGAAAAACAACGGATCAAATGCAATAAGAGAGTTGCCTGTTGAAGATGCGGAGGAGGAAAGATTCCAGGCTGATCTTGAAATTGCTGTACGCCAAAGCCTGGACACGTTTCAAGCTCGGGGAAATTTTCCTTCAGCTTCCAGTTTAAGGATGTCCCAGAGAGCTTCTTCAGTGGTAGATAGTGTTGATTGCCGGCCTGGAGAAGACCCAATGGATAATTTGGATGGGGCTACTTTGCTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGAGTAGAATTTCTTGGCAGATCAAGAACAGAGCATGATCATGTGGGAAATCCTTGTGTTGTCTGTGCATTGTACGAAATCTTTACTGCACTGGACATTGCATCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCCCTGCGGATAGCTCTAAGTAATCTGTATCCTCACAGTAGTTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCGGTCATTTACTCGTGGTTCAAGTGTTTCTGATGCAGAATCAGCTGAAAGTAACTGCATGGGATCCTGGGATTGTGCAAATGATAGTTGTATAGCACACTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTATCACTGTGGTCTTGAATCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCCAGTGCTCTACGTGATATGAAGGAAAAGTCTTCTGCAAGTTTCTTTGATAATCTTTTGAATCTTGTGGAGATGAACCATCAGTTGGCTTGCGACCCAGAAGCTGATGGTTGTGGCAAGCTGAACCACATCCATCACTTTCTGTCAACTCCACCCCATGTTTTTATGACAGTACTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAGCAGCAACTCTGGCTGCCCTGAGCACCACAATCAATATCAGTGCCCTTTATGGTGGTTTAAATCTTGAATGCACCCATAACTTGGTGTCAGTGGTTTGCTACTATGGTCAGCACTACCATTGCTTTGCTTATAGTCATGACCATGAACAATGGATTATGTACGATGATAAGACTGTCAAGGTAATTGGTGGATGGGCTGATGTTGTTACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAA 5007 0.439 MGHKKRNPAPRTKQPAAASPAVQSGVGGAANGATSPDADASNVSDHKPHNPSKIELAPPLSEGSEYSTIKLECERALTTLRRGNHNKAMKLLREICAREEGSPHSAFVHRVHSLMCFKTATIITDPSSKQRHLKNALESARRAVELMPNSVEYAHFRATVMLEAATEGKDYEDVVHECERGLAIENPSDPAKETLQDESEQKASSTEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGDRDDRPLDSSGGSGQRIGDRRRHGNVKKSGFTAERMKWVHSFWNSVSMDRKKDFLRVKICDLKSHYGSSKDTLPNDILSEALSYAEANKTWKFWACCNCEEKHSNPDSHRHHVVQEHMGSLSPQMQRLLPQNVDSEWIEMILNCSWKPLDVLAAVRMLDNKARFKSPSLPEDLYLDHHTLDYNVCFKEASSSYIEKESSGDTLRNCLEECNNNCKIIENDVREGVEDQLSVVDRIIDCWPVSDDPERAKLLGKIHAMFETLIRHKCLAASHLNKVIQFTMGEIQGLAAGSQLLNHGVDQTPMCICFLGPSQLKTIFQFLQEISHACGLARNADKGSSPTNDSLNISQGPEIKDKIVLDGDASRLLLDECLLQTQVIAGTNQGSVLDDVTTPRSPDGISCYNNALLSWIFSSSPIGDQVTSWLRIREDKINKGKEIVQMLEKEFYHLQGLCEKKGERLSYEEALQTVEDLCLEEGKKRETLGEFVQRSYESVLRKRREELIESENDMMYVSNRFELDAISNVLQEAEARNVNQFGYKEAYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKIDARIIRSVTEMQQLEFKLGPISANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKTVKSGSENTKHVEKTKDRKKNKDHRKARDLKASGDHVQFSVGSTIPDSNLVAPESDFLDHEVVSMNDDDLEQLEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQRHLAEQQKRSSGLYLEVEEDLQDFQTKADMGSPDSYKHVRETMQIGISLFLVSPASFRETEVGVVINLAVTWFARLPDQLVQDNGSRSSLDGVLMATANGSIYLHQSKVKQADLPNGVIRENGLPVADRRTGKKPRRRNSSRPVDGKIESFSSEKENTEETHPESLLREKFKFNNSQVNNNVWKNNGSNAIRELPVEDAEEERFQADLEIAVRQSLDTFQARGNFPSASSLRMSQRASSVVDSVDCRPGEDPMDNLDGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRTEHDHVGNPCVVCALYEIFTALDIASKDSRREAVAPTSLRIALSNLYPHSSFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDAESAESNCMGSWDCANDSCIAHSLFGMNIFEQMNCYHCGLESRHMKYTSFFHNINASALRDMKEKSSASFFDNLLNLVEMNHQLACDPEADGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDIAATLAALSTTINISALYGGLNLECTHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVVTMCERGHLQPQVLFFEAVN 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00744 1668 MobiDBLite consensus disorder prediction 191 208 - -
Vimu7g00744 1668 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1335 1667 IPR028889 -
Vimu7g00744 1668 MobiDBLite consensus disorder prediction 292 334 - -
Vimu7g00744 1668 MobiDBLite consensus disorder prediction 1 61 - -
Vimu7g00744 1668 MobiDBLite consensus disorder prediction 183 208 - -
Vimu7g00744 1668 Gene3D Tetratricopeptide repeat domain 64 221 IPR011990 GO:0005515
Vimu7g00744 1668 MobiDBLite consensus disorder prediction 302 334 - -
Vimu7g00744 1668 Gene3D Cysteine proteinases 1329 1666 - -
Vimu7g00744 1668 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1667 - -
Vimu7g00744 1668 MobiDBLite consensus disorder prediction 1209 1235 - -
Vimu7g00744 1668 SUPERFAMILY Cysteine proteinases 1335 1665 IPR038765 -
Vimu7g00744 1668 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Vimu7g00744 1668 Coils Coil 196 223 - -
Vimu7g00744 1668 CDD Peptidase_C19 1426 1665 - -
Vimu7g00744 1668 MobiDBLite consensus disorder prediction 967 998 - -
Vimu7g00744 1668 MobiDBLite consensus disorder prediction 1191 1235 - -
Vimu7g00744 1668 Coils Coil 1031 1072 - -
Vimu7g00744 1668 Pfam Protein of unknown function (DUF629) 345 878 IPR006865 -
Vimu7g00744 1668 Pfam Ubiquitin carboxyl-terminal hydrolase 1336 1643 IPR001394 GO:0004843|GO:0016579
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00744 69 1665 C2H2 Transcription Factor Family AT3G47890 54.517 0.0 1628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00744 - - gmx:100799759 2757.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00744 7 7434033 7441542 Vimu7g00744 7 7434033 7441542 ECH