Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00736 ATGACAAGATTGAGGAAGAATCGACGTTTTTACTACAACGTATATCTGTTAGGAGAAAATGACATTAATGACATCAATGTTCTGATGCCGACAACTCTTTTCAGATTTACCACTAGAGTTTTTTATGAAAATACTTCGCTTCCAAGAGGTCGCTCTTCTGCTCTTATAACAAATCAAACCTTCTTACAAGACGGTTCACATTCCTTCAGGACACTGTTATCGCCACTGTCATTGCTCAGATATTTTTGCACTCACATTATAGAAGCAATAGCAAACGTGGCTACTGACGAAATTCGAGAAATCTTCCAAATTGATGATGTTGTTACTCCTTTGGAATCTCAATCCTCAGAAGTTCCTCTATGGATTGTGATCAATGTCAATGACACATTGTTGAAGAAATCTACCGTGTTACAAACTGAGTGTTGTTGCATATGTTTGGATAAATTCAATCTCAATGCTGAGTGCTACACACTTCCATGTAAACACTTTTTTCATAAAAAATGTATCATGCGCTGGCTACACACCAGTCAGACCTGTCCCATGTGTCGCCAATCTTACGAACCCTAA 567 0.381 MTRLRKNRRFYYNVYLLGENDINDINVLMPTTLFRFTTRVFYENTSLPRGRSSALITNQTFLQDGSHSFRTLLSPLSLLRYFCTHIIEAIANVATDEIREIFQIDDVVTPLESQSSEVPLWIVINVNDTLLKKSTVLQTECCCICLDKFNLNAECYTLPCKHFFHKKCIMRWLHTSQTCPMCRQSYEP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00736 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
Vimu7g00736 188 SMART ring_2 142 182 IPR001841 -
Vimu7g00736 188 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Vimu7g00736 188 SUPERFAMILY RING/U-box 141 186 - -
Vimu7g00736 188 Pfam Ring finger domain 142 183 IPR001841 -
Vimu7g00736 188 CDD RING-H2_PA-TM-RING 141 183 - -
Vimu7g00736 188 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 81 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00736 Vimu-Chr7 7378089 7378655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00736 122 183 C3H Transcription Factor Family AT1G18760 40.323 1.07e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00736 - - vum:124843592 232.261