Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00733 ATGGAACCTCCGCTCGTCAACGACGCCACATTCTCTTCGGCCAACCCTTCTTTGTCCGAGATTTGGCCCTCGCAATTCCCCTCCTCCAACAAGAGACCCTCTTCTCTTCTTCTTCACAATCACTCTCCCAACACTAACAAACACGTTAAGCTATCACCACCCTCAGAGACACACCAAAACGCTGCGTTGCGCCCTCCTCAACCCGACGCCACTTCCGTGGCCGCCGCCAACAACTCTCCCCTTCAAACTCCCAAACCCAAGCAGGACTACATACACGTGCGAGCAAGAAGAGGCCAAGCCACCGATAGCCACAGTCTCGCCGAAAGAGCTCGTAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCCGGCTGTGGCAAGGTAATTGGTAAAGCGCTTGTCCTGGATGAGATTATTAACTACATCCAGTCCCTGCAGCGTCAGGTTGAGTTTCTTTCGATGAAGCTTGAGGCGGTTAATTCGAGATTGAGTATTAGCCCTTCTATTGAATGTTTTCCCTCAAAAGAAGTTGCCACTCAGCCATTTGACCTTTCAGGAATAATATTTGGATCACAACCGGCAAGGGGATTTGCTCAAGGATCACAAGCTGGATGGCTGCATATGCAGATAGCTGGTGGTTTTGAGAAAGTAACATAA 669 0.4903 MEPPLVNDATFSSANPSLSEIWPSQFPSSNKRPSSLLLHNHSPNTNKHVKLSPPSETHQNAALRPPQPDATSVAAANNSPLQTPKPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCGKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLSISPSIECFPSKEVATQPFDLSGIIFGSQPARGFAQGSQAGWLHMQIAGGFEKVT 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00733 222 Gene3D - 96 171 IPR036638 GO:0046983
Vimu7g00733 222 MobiDBLite consensus disorder prediction 1 90 - -
Vimu7g00733 222 Pfam Helix-loop-helix DNA-binding domain 103 150 IPR011598 GO:0046983
Vimu7g00733 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 149 IPR011598 GO:0046983
Vimu7g00733 222 CDD bHLH_AtBPE_like 89 172 - -
Vimu7g00733 222 MobiDBLite consensus disorder prediction 8 85 - -
Vimu7g00733 222 FunFam Basic helix-loop-helix transcription factor 96 168 - -
Vimu7g00733 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 167 IPR036638 GO:0046983
Vimu7g00733 222 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 45 192 IPR024097 GO:0006355
Vimu7g00733 222 Coils Coil 146 166 - -
Vimu7g00733 222 SMART finulus 105 155 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00733 Vimu-Chr7 7328471 7330971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00733 1 38 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 58.537 3.52e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g00733 HLH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00733 - - gmx:100799646 328.176