Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00729 ATGTCTCGCACCTGCCCTGTTACAGACTCCGTTGCCTCCTCCGGCGAAATCATGCTGTTTGGGGTTAGAGTGGTTGTAGATTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCACAGTACGAGCATCCGCACGATGCTAACCACAACAAAGATAACAAAGATGTTCTCTCAGTTAGTTATGCATCAGCCGATGACGCCGTTCCTCATAACACCGGCCGCCACCGCGAGCGGGAGCGCAAGCGAGGAGTTCCGTGGACGGAGGAAGAACACAAACTGTTTTTGGTTGGGTTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTATGTGAAAACGCGAACTCCAACTCAGGTTGCGAGCCATGCTCAGAAGTACTTTCTCCGAAGAAGCAACCTGAATCGTCGTCGCCGTAGATCCAGCCTATTTGACATCACCACCGACACGGTCTCTGCAATTCCAACGGAGGAAGAACAGGTCCAGAATCAAGACACCCTGTTTCATTCACAACCAGTGTGCCCAGCAGTTCCCGAAACTAGCAAAAGTGGAATTCCAATGATGCCAGTTTATCAGTTTGGGATTGGTTCTGGGGCTATTACAGTCCAAGGTGGGAAACCATTAGAAGAACTCACTCTGGGGCAAGGAAACATAGAGCACAATGTGCCAATCAATCTGGTCCGTGCAATTCCTGTTGTTGCAGATCCTAAAGCATCCACAGTGTCTGATATCATCACCCCAAGTTCTAGTTCTGCTGTTGACCCACCCACACTGTCCTTGGGGCTAACCTTCTCTTCTGACCAAAGGCAAACATCATCAAGACATTCTGCTTTACATGTCATGCCATGTTTCAGCAATGGAGATAGCATCATTAGTGTTGCTTAA 891 0.4871 MSRTCPVTDSVASSGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPHDANHNKDNKDVLSVSYASADDAVPHNTGRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPTEEEQVQNQDTLFHSQPVCPAVPETSKSGIPMMPVYQFGIGSGAITVQGGKPLEELTLGQGNIEHNVPINLVRAIPVVADPKASTVSDIITPSSSSAVDPPTLSLGLTFSSDQRQTSSRHSALHVMPCFSNGDSIISVA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00729 296 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Vimu7g00729 296 CDD SANT 85 130 IPR001005 -
Vimu7g00729 296 Gene3D - 84 136 - -
Vimu7g00729 296 PANTHER TRANSCRIPTION FACTOR KUA1 2 236 - -
Vimu7g00729 296 SUPERFAMILY Homeodomain-like 80 135 IPR009057 -
Vimu7g00729 296 Pfam Myb-like DNA-binding domain 85 130 IPR001005 -
Vimu7g00729 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 81 132 IPR006447 GO:0003677
Vimu7g00729 296 SMART sant 82 132 IPR001005 -
Vimu7g00729 296 MobiDBLite consensus disorder prediction 69 84 - -
Vimu7g00729 296 MobiDBLite consensus disorder prediction 63 84 - -
Vimu7g00729 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
Vimu7g00729 296 ProSiteProfiles SANT domain profile. 81 134 IPR017884 -
Vimu7g00729 296 FunFam transcription factor MYB1R1 84 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00729 Vimu-Chr7 7295771 7297175 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu7g00729 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00729 - - gmx:778059 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00729 7 7295771 7297175 Vimu10g01139 10 10940189 10942720 PCT