Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00716 ATGGCTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCTTTAGGACTTTTGTGCACCAATTTCTTGAGTCTCTATAACCGAGACACAGTGCACTTAATTGGCCTTGACGACGCTGCCACTCGATTAGGAGTCGAGAGAAGACGGATCTATGACATTGTTAATGTTCTCGAAAGTATTGGGGTTCTCTCGAGGAAAGCAAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCCCTTACCCTTCGGGAGCTAAAAGAAGATGGGCAGAGGGAGAATTCCAGTTCCTTGCGCGGGTCCACTAACGACGACATGTATAAAGTTTCCGATGACGAAGACGATGAAGAAACACAGTCCAATGCCGCAACTGGAAGTCAAAACGACAAGTTGAACCCTAAATCTACTCAACCCAAATCACTAAAAAATGAAAATCGAAGGGAAAAATCTTTGGCTCTGCTGACCCAGAATTTTGTCAAACTCTTCGTGTGCTCTAATGTTGAATTGATCTCCCTTGATGAGGCTGCAAAGTTGTTGCTTGGAGATGCTCACAATACCTCAATAATGAGAACAAAAGTTAGACGCCTGTATGACATCGCAAATGTGCTATCCTCTATGAACCTTATTGAGAAGACCCATACGTCAGATACAAGAAAACCAGCGTTCAGGTGGTTGGGTCCTGAAGGGAAGACATGGAATGAGTCACTTCACAAATCAAATCAGAACGAGTCTAGGAAACGGGCGTTTGGGAGTGATATTACAAACATCAGCTTTGAGAGGAATAAGGTGGAACTATTCACAAATGGAGACTTAAATTCGAATCCCAAGAAGCTAAAAATTGAAAATGATAGAGGGCCGGCTCAGGCAGATGAAAGCAATTTAAAACAAGATACAAAACAAACTACGAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCGTGCGTGCCCGGAGTTGGAGCCTCTGGGAATAATAATGTAAAGCAGGTGCATGACTGGGACGCTTTGAGAGATCTCTTTTCCCATTACATGGAGGCATGGAAATCGTGGTACTCTGAGATTGCTGCAAAAAGACCATTAAAAATTTTGTAA 1107 0.4273 MASSDPISSKHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGQRENSSSLRGSTNDDMYKVSDDEDDEETQSNAATGSQNDKLNPKSTQPKSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGPEGKTWNESLHKSNQNESRKRAFGSDITNISFERNKVELFTNGDLNSNPKKLKIENDRGPAQADESNLKQDTKQTTKSYQFGPFAPACVPGVGASGNNNVKQVHDWDALRDLFSHYMEAWKSWYSEIAAKRPLKIL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00716 368 MobiDBLite consensus disorder prediction 126 145 - -
Vimu7g00716 368 Gene3D - 11 83 IPR036388 -
Vimu7g00716 368 Gene3D - 147 233 IPR036388 -
Vimu7g00716 368 MobiDBLite consensus disorder prediction 282 296 - -
Vimu7g00716 368 MobiDBLite consensus disorder prediction 95 151 - -
Vimu7g00716 368 FunFam E2F transcription factor 8 11 83 - -
Vimu7g00716 368 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Vimu7g00716 368 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Vimu7g00716 368 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Vimu7g00716 368 PANTHER TRANSCRIPTION FACTOR E2F 9 324 IPR015633 GO:0000978|GO:0006357
Vimu7g00716 368 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Vimu7g00716 368 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Vimu7g00716 368 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Vimu7g00716 368 FunFam E2F transcription factor-like E2FE 147 234 - -
Vimu7g00716 368 MobiDBLite consensus disorder prediction 280 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00716 Vimu-Chr7 7173276 7176704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00716 11 365 E2F-DP Transcription Factor Family AT3G48160 51.613 1.99e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vimu7g00716 E2F_TDP 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00716 K09391 - gmx:100795252 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00716 7 7173276 7176704 Vimu7g00716 7 7173276 7176704 ECH
Vimu7g00716 7 7173276 7176704 Vimu10g01152 10 11104389 11109340 PCT