Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00715 ATGTCCATCGCAATTCCCAATCGTCAATTGTTCATAAACGGTGACTGGAAAGTCCCTGCCCTCGGCAAACGGATTCCCATTATCAACCCTTCCACACAACAGATCATCGGGGATATCCCAGCCGCTACTAAGGAAGATGTCGACGTCGCCGTCGCCGCCGCCAAAGCCGCCCTTTCCCGCAACAAAGGCGCCGATTGGGCCTCCGCTTCCGGCGCTGTTCGGGCCCGCTATCTCCGTGCCATCGCTGCCAAGGTCACCGAGAAAAAACCCGAGCTCGCAAAACTAGAAGCCATCGACTGTGGAAAACCGCTGGATGAAGCTGCCTGGGACATCGACGATGTTGCTGGTTGCTTTGAGTTCTACGCTGATCTAGCTGAAAAATTGGACTCCAAGCAAAAGGCTCCGGTGTCTCTTCCCATGGACACATTCAAGAGTTACGTTCTTAAGGAGCCAATTGGGGTTGTAGGATTAATAACTCCCTGGAATTATCCTATGTTGATGGCTACGTGGAAGGTTGCTCCTGCTCTGGCAGCGGGTTGTGCTGCAATACTGAAGCCCTCTGAGTTGGCATCTCTAGGTGAGATTTGCAAAGAAGTGGGGCTTCCTCCTGGTGTGTTGAACATTCTCACTGGATTAGGACCTGAAGCCGGTGCTCCATTAGCAGTCCATCCTGATGTCGACAAGATTGCCTTTACTGGAAGCTCTGCGACGGGGAGCAAGATTATGACGGCCGCAGCCCAGCTGGTCAAGCCTGTTTCACTAGAGCTTGGTGGAAAAAGTCCAATCGTTGTGTTTGAGGATGTTGACCTTGACAAGGCTGCTGAATGGACCATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTACATGAAAGTATAGCAACAGAGTTTTTGAATAGGATTGTGAAATGGATAAAAAACATCAAAATTTCTGATCCCTTGGAAGAAGGTTGCAGACTAGGCCCTGTTGTTAGTGAGGGACAGAGGGAGTCAGGGAAGAAGGAACCTTCTCCTGGTCGATGTATATGTTTCCATGCTTTAGGTTTCTTTCTGTATGAAAAAATATTGAAGTTTATCTCAAATGCTAAGAGTGAGGGTGCAACCATTTTGACTGGTGGATCTCGCCCTGAGCATCTAAACAAAGGATTCTTCGTTGAACCTACTGTCATAACCGATGTGACTACCTCTATGCAAATTTGGAGAGAAGAAGTATTTGGACCTGTTCTCTGTGTAAAAACATTTAGCACTGAGGAAGAAGCAATTGATCTAGCAAATGACACTGTATATGGCTTAGGTTCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGCATTACTAAGGCTTTTAAGGCTGGAATTGTGTGGATTAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCATTAAACGCAGCGGCTTTGGTCGTGAATTAGGAGAATGTACATCTCTGATGAACCGTGGGGCTGGTACCACTCTCCCTCAAAGATGTGACACTTATCTAAGAGCTGAGATGGAATAA 1554 0.4749 MSIAIPNRQLFINGDWKVPALGKRIPIINPSTQQIIGDIPAATKEDVDVAVAAAKAALSRNKGADWASASGAVRARYLRAIAAKVTEKKPELAKLEAIDCGKPLDEAAWDIDDVAGCFEFYADLAEKLDSKQKAPVSLPMDTFKSYVLKEPIGVVGLITPWNYPMLMATWKVAPALAAGCAAILKPSELASLGEICKEVGLPPGVLNILTGLGPEAGAPLAVHPDVDKIAFTGSSATGSKIMTAAAQLVKPVSLELGGKSPIVVFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIVHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQRESGKKEPSPGRCICFHALGFFLYEKILKFISNAKSEGATILTGGSRPEHLNKGFFVEPTVITDVTTSMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGIVWINCSQPCFTQAPWGGIKRSGFGRELGECTSLMNRGAGTTLPQRCDTYLRAEME 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00715 517 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 282 293 IPR016160 GO:0016491
Vimu7g00715 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 261 IPR016162 GO:0016491
Vimu7g00715 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 477 491 IPR016162 GO:0016491
Vimu7g00715 517 Pfam Aldehyde dehydrogenase family 23 339 IPR015590 GO:0016491
Vimu7g00715 517 Pfam Aldehyde dehydrogenase family 360 491 IPR015590 GO:0016491
Vimu7g00715 517 SUPERFAMILY ALDH-like 5 491 IPR016161 GO:0016491
Vimu7g00715 517 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 272 - -
Vimu7g00715 517 PANTHER ALDEHYDE DEHYDROGENASE 4 338 - -
Vimu7g00715 517 CDD ALDH_F10_BADH 27 491 - -
Vimu7g00715 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 360 476 IPR016163 GO:0016620
Vimu7g00715 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 262 339 IPR016163 GO:0016620
Vimu7g00715 517 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 254 261 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00715 Vimu-Chr7 7162581 7167738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00715 1 491 Aldehyde Dehydrogenase Gene Family AT1G74920 76.613 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00715 K00130 - gmx:100170731 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00715 7 7162581 7167738 Vimu7g00715 7 7162581 7167738 ECH
Vimu7g00715 7 7162581 7167738 Vimu10g01154 10 11132262 11136267 PCT