Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00704 ATGGCATCATTTGCAGGCACCACCCAGAAGTGCACAGCTTGCGAAAAGAAAGTGTATTGGGTGGAACAGCTTACTGCTGACAACAAGGTGTACCATAAATCGTGTTTCAGATGCCACCACTGCAAGGGCACCCTCAAGCTGGGTAACTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAACTGTTTAAGATGACTGGAAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTTGAAAGATCTGCTGATCAGGTCCAAACCAACAAGGTTTCAAGATTGTTTTCTGGAACTCAGGAAAAGTGTGTTGTTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGGAAATCTTACCACAAGTCTTGTTTCAGATGCACCCATGGTGGTTGTGTAATTAGCCCATCAAATTATGTTGCCCATGAACATCTTCTCTATTGCAGACATCACCATACTCAGCTCTTCAAGCAAAAGGGTAACTTCAGTCAGTTAGTGAAGCATGAAAATCTCCAACTCACCATTCAAAACACTACACAACATCCAACTAATGGTACTGCAACTCCACCTCATCACTCTTCTTAG 612 0.4248 MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRIARVERSADQVQTNKVSRLFSGTQEKCVVCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHLLYCRHHHTQLFKQKGNFSQLVKHENLQLTIQNTTQHPTNGTATPPHHSS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00704 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Vimu7g00704 203 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Vimu7g00704 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Vimu7g00704 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Vimu7g00704 203 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Vimu7g00704 203 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Vimu7g00704 203 SMART lim_4 108 160 IPR001781 -
Vimu7g00704 203 SMART lim_4 10 62 IPR001781 -
Vimu7g00704 203 FunFam LIM domain and actin-binding 1 5 75 - -
Vimu7g00704 203 PANTHER OS06G0237300 PROTEIN 2 94 - -
Vimu7g00704 203 FunFam LIM domain and actin-binding 1 103 173 - -
Vimu7g00704 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Vimu7g00704 203 CDD LIM2_SF3 109 169 - -
Vimu7g00704 203 Gene3D Cysteine Rich Protein 103 173 - -
Vimu7g00704 203 Gene3D Cysteine Rich Protein 5 75 - -
Vimu7g00704 203 Pfam LIM domain 109 164 IPR001781 -
Vimu7g00704 203 Pfam LIM domain 11 65 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00704 Vimu-Chr7 7045032 7047745 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vimu7g00704 LIM 3.9e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00704 K09377 - gmx:100792627 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00704 7 7045032 7047745 Vimu7g00704 7 7045032 7047745 ECH
Vimu7g00704 7 7045032 7047745 Vimu10g01168 10 11354942 11357471 PCT