Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00693 ATGCGCAACATTCAGGTTGAAACGAAGCAAAACGGTGATGTGAAGTACTCGTACGAGTCATATCCTATATCTCCTTTCTCAGCTTATCAAGCTCCAAACGATGGTAACACTACCAACGAGCAAGAATCAACAACGCCGTCATCTCTCAGCAGAATCAGCCCACTCATTTTGCTGGTCATAATTGTTCTAGCAGTTATCTTCTTCGTGTATGGACTTGTCCATTTGGTTCTATGGTTTTTCATGAAAACACCAACCTCTTCATCAATCTACAACTCCAACAGGTTCCACGAATCCACGCGATCACGTGTTCTTCAGAGGCAGCTTCAACAACTCTTCCGCTTGCAGGATTCAGGTATAGACCAAGACCTCATAGACGCTCTACCAGTTTTCCATTACCAAGACCTGCTGGGTTCAAAGGAACCGTTTGATTGTGCCGTGTGTTTATGCGAGTTCTCCGAGGACGACAAGCTGAGGTTGCTTCCTATGTGCACACACGCCTTTCACATGACCTGTCTTGACACGTGGCTTCTGTCGAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTCTCGAACTACGTGGATAATGAAAATCCTATTTTGCTTAATGTGGGTATTGAGAATTCAAATTCTTTGGTTGTGGCAAGTGGGTTGAGAGGTGAGGAAGAGAACGGGTTTTCAGAGAGTGAAAGATCAGTTGGGAAAAGGGTGTTTTCTGTGAGACTTGGAAAATTGAGAAAGAATGGGATGGAGTTAGGGAGTGGAGATAGTTGTAGGTTGAATGAGAGAAGATGCTACTCCATGGGTTCATATAGGTATGTGGTTCGTGATTCCAATCTGCAAGTGGTTTTATCTGAATCTGGTGATGTTTCAGAAAATGAGAATGTGAAGGGAAAGAGTATAAGCGACTCAACCAAAGCTGAGAGCTTCTCTGTTTCCAAGAACCCTACATTTCATGCTTCTAATGCACCTTTCCCTTAA 978 0.4407 MRNIQVETKQNGDVKYSYESYPISPFSAYQAPNDGNTTNEQESTTPSSLSRISPLILLVIIVLAVIFFVYGLVHLVLWFFMKTPTSSSIYNSNRFHESTRSRVLQRQLQQLFRLQDSGIDQDLIDALPVFHYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMTCLDTWLLSNSTCPLCRASLSNYVDNENPILLNVGIENSNSLVVASGLRGEEENGFSESERSVGKRVFSVRLGKLRKNGMELGSGDSCRLNERRCYSMGSYRYVVRDSNLQVVLSESGDVSENENVKGKSISDSTKAESFSVSKNPTFHASNAPFP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00693 325 SMART ring_2 144 185 IPR001841 -
Vimu7g00693 325 Pfam Ring finger domain 143 186 IPR001841 -
Vimu7g00693 325 CDD RING-H2_EL5-like 143 186 - -
Vimu7g00693 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 195 IPR013083 -
Vimu7g00693 325 FunFam RING-H2 finger protein ATL47 119 195 - -
Vimu7g00693 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 313 - -
Vimu7g00693 325 MobiDBLite consensus disorder prediction 286 325 - -
Vimu7g00693 325 MobiDBLite consensus disorder prediction 286 319 - -
Vimu7g00693 325 SUPERFAMILY RING/U-box 123 198 - -
Vimu7g00693 325 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00693 Vimu-Chr7 6955345 6956322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00693 50 284 C3H Transcription Factor Family AT2G18650 43.066 3.34e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00693 - - gmx:100807741 410.994