Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00682 ATGAAGGAAAGCAGTGATGGGTTTGTGAGGGCCGATCAAATTGATCTGAAGAGCATAGATGAACAGTTGGAGAGGCACCTCAACAAAGTGCTCACCATAGACAAGAAAAAGCGCTCTGATGAGGAGGAAGATGCTGATCAGGTTCATGTTCACACCAGTGCCACTGCCTCTCCCAAATTCAGACCCGCCGCCTCTGCTAGGCTGAACCTCAAGAAGCAAAAGCAGGAGTGGGAGATTGATCCTTCTAAACTCATCATCAAAAGTGTCATAGCTCGTGGCACTTTTGGCACTGTTCATCGTGGTGTCTATGATACTCAAGATGTTGCTGTTATTGTGGTTACTAAATGTTCAGTGAAATTGTTGGACTGGGGAGAGGAAGGACAAAGGACAGAAGCAGAAATTGCCTCCCTGAGAGCAGCTTTTACACAGGAAGTTGTTGTTTGGCATAAACTTGATCATCCCAATGTCACAAAGGGTGGAGGGATCCATCCAAACATAGAATTTTCTGCCATATTAGGTCCTATGAATTTGTGTTATCAGTTTATAGGGGCAACAATGGGGTCTTCAGAATTGCAGATACAAACTGATAATGGTCTAATTGGCATGCCAAGCAATTTCTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGAAATCTGAAATCATACCTAATAAAGAACAGGAGGAGGAAGCTAGCTTTTAAGATTGTCATTCAGCTGGCACTTGATCTTGCAAGAGGGTATCTATCTATTTTTTCCACCTGGTTTAGCGGTTGGGACAATAATTACCGTAGTTTGTGTGCAACTACTCAACCTGAATTCACTTGGTTTTACAGGCTGAGTTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTGAAGACAGAAAACATGCTGTTGGACAAGACACGCACAGTTAAAATTGCTGATTTTGGGGTTGCACGTGTTGAGGCATCAAATCCTAACGATATGACTGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAATAGGAAATGTGATGTGTACAGTTTCGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACATCAGCTGTTGTTCGACAGAATTTAAGACCAGAAATACCAAGATGTTGCCCAAGTTCTCTGGCAAATGTCATGAAGAAATGCTGGGATGCCACTCCAGATAAGCGACCAGAGATGGATGAGGTAGTTTCAATGCTGGAAGCCATTGACACAACCAAAGGTGGAGGTATGATCCCTCATGATCAGCAGCAGGGTTGTTTTTGCTTCCGCAAGCATAGAGGGCCTTGA 1350 0.4333 MKESSDGFVRADQIDLKSIDEQLERHLNKVLTIDKKKRSDEEEDADQVHVHTSATASPKFRPAASARLNLKKQKQEWEIDPSKLIIKSVIARGTFGTVHRGVYDTQDVAVIVVTKCSVKLLDWGEEGQRTEAEIASLRAAFTQEVVVWHKLDHPNVTKGGGIHPNIEFSAILGPMNLCYQFIGATMGSSELQIQTDNGLIGMPSNFCCVVVEYLAGGNLKSYLIKNRRRKLAFKIVIQLALDLARGYLSIFSTWFSGWDNNYRSLCATTQPEFTWFYRLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDATPDKRPEMDEVVSMLEAIDTTKGGGMIPHDQQQGCFCFRKHRGP 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00682 449 PRINTS Tyrosine kinase catalytic domain signature 281 299 IPR001245 GO:0004672|GO:0006468
Vimu7g00682 449 PRINTS Tyrosine kinase catalytic domain signature 347 369 IPR001245 GO:0004672|GO:0006468
Vimu7g00682 449 PRINTS Tyrosine kinase catalytic domain signature 211 224 IPR001245 GO:0004672|GO:0006468
Vimu7g00682 449 PRINTS Tyrosine kinase catalytic domain signature 391 413 IPR001245 GO:0004672|GO:0006468
Vimu7g00682 449 Gene3D Phosphorylase Kinase; domain 1 65 171 - -
Vimu7g00682 449 Pfam Protein tyrosine and serine/threonine kinase 279 420 IPR001245 GO:0004672|GO:0006468
Vimu7g00682 449 SMART serkin_6 84 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00682 449 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 53 423 - -
Vimu7g00682 449 CDD STKc_MAP3K-like 90 420 - -
Vimu7g00682 449 ProSiteProfiles Protein kinase domain profile. 84 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00682 449 Gene3D Transferase(Phosphotransferase) domain 1 215 438 - -
Vimu7g00682 449 MobiDBLite consensus disorder prediction 34 56 - -
Vimu7g00682 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Vimu7g00682 449 SUPERFAMILY Protein kinase-like (PK-like) 67 420 IPR011009 -
Vimu7g00682 449 MobiDBLite consensus disorder prediction 34 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00682 Vimu-Chr7 6877193 6881261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00682 1 381 MAP Kinase Kinase Kinase AT5G50000 67.454 1.38e-178 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu7g00682 PK_Tyr_Ser-Thr 3.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00682 - - gmx:100807921 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00682 7 6877193 6881261 Vimu7g00682 7 6877193 6881261 ECH