Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00681 ATGAAGAACACAAACACTACTGTCACTGCTTCATCAAAACTTGACCGCAAAACCATTGAAAGGAACCGCAGAATCCACATGAAAGCTCTCTGCTTCAAGCTTGTTTCAATTATCCCTTCCAAGTACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGACCAGCTCGATCTTGCAGCCACGTATATAAAGCATCTGAGAGAAAGAATAGAGAAACTGAAGGGGGAGAAGGAGCAAGCCATGAAAATGATGAGAACAACCCAAACCAATAACGGGATTTTCAATATTGACTCTGAGTTGCCTCTACTTGAGATAAAGGAGTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGGTGAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAGGAAGAGGGTGTTGAAGTTGTCGCTGCCAACTTCTCTACTGTTGATAATAAGATCTTTTACACAGTTCATGCTCAGGGTATATCAAAAGCTTCAGGAATTGATTGCACCACTAGAAAGCTGGTAGTACATATCGTGATGCAAGGAAAAATTATTAAAGGCCATTATCGGTGGCCAATGAGAACATGA 588 0.4184 MKNTNTTVTASSKLDRKTIERNRRIHMKALCFKLVSIIPSKYLKPTKDMLSQQDQLDLAATYIKHLRERIEKLKGEKEQAMKMMRTTQTNNGIFNIDSELPLLEIKELGSGIEVMLISGVNKNFMLYEVISVLEEEGVEVVAANFSTVDNKIFYTVHAQGISKASGIDCTTRKLVVHIVMQGKIIKGHYRWPMRT 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00681 195 Gene3D - 2 93 IPR036638 GO:0046983
Vimu7g00681 195 FunFam Transcription factor bHLH162 3 93 - -
Vimu7g00681 195 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 165 - -
Vimu7g00681 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Vimu7g00681 195 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Vimu7g00681 195 Coils Coil 63 90 - -
Vimu7g00681 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 86 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00681 Vimu-Chr7 6844786 6845705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00681 1 159 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.118 8.58e-25 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g00681 HLH 6.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00681 - - vun:114179389 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00681 7 6844786 6845705 Vimu10g01210 10 11966894 11967925 ECH
Vimu7g00681 7 6844786 6845705 Vimu7g00681 7 6844786 6845705 ECH
Vimu7g00681 7 6844786 6845705 Vimu10g01210 10 11966894 11967925 PCT