Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00679 ATGTGTGTGTATGTATTCTTTAACCTCTCTACTTCTAGAGTTATTGTCGCAATTAATTGGAAGCGGTATCATTCTTGTGCCTATCCGTTGCACATATGGATTGTGGTCGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCGGGAATGGGATTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTATATCCATTTCTGTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCAAAGAACTGTTTGCCTGAAGATGGTCAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGTTACTGTGGACTCCTTTGCATTGCTTGCATGTCTCTGGGAAAGGTGTGGTTGACACGAAGACAAGCACATCTACTGCGTGCTCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAAGAAACAAGGGGCATGGTACAAGATGCTGCGGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTTAGGTTAAAGGCTGTTCCTACCGATTGCAGTGAATGTCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTATACCTTTTCCTAATCAAGGGAGGCAAGAAGGTCACAGCTTTTGCTTCTTGCTATCCATTACTGCAAAATGCTCTCCTTGTTCGAGGCTTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGTCGTTGCTCAGTATTTCCAAACCTTGATCTTAGTGCACTATCCAATCTCCCTGCAGAGCCTGAGCGATCTTCTGCAAGTGTTGTGACAACAACCAGTTATGTGAGAGGCCAACCATCTACTCAAAGCTACCGGTTAAGATTGCAGGGTCTTCTGCGTCCTGTCCGTGCTGAAATTGCTGGCCCTGTTGGTGACATAGATAATTCTCTGGACAATGTTGAGAACGGTTTTGTATCAATTGTGACTCACAATGCATCATCTGGAGACCACGTCTCTTCTGTCGAATGCGTGCCTGTCACTGTAAGACTTTCCTCTGCACAAAGTTAG 1203 0.4505 MCVYVFFNLSTSRVIVAINWKRYHSCAYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEDGQKWGFLIWLLFSYCGLLCIACMSLGKVWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMVQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVYLFLIKGGKKVTAFASCYPLLQNALLVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLPAEPERSSASVVTTTSYVRGQPSTQSYRLRLQGLLRPVRAEIAGPVGDIDNSLDNVENGFVSIVTHNASSGDHVSSVECVPVTVRLSSAQS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00679 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 299 IPR013083 -
Vimu7g00679 400 SMART ring_2 226 293 IPR001841 -
Vimu7g00679 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 8 377 IPR044793 GO:0004842|GO:0010182
Vimu7g00679 400 ProSiteProfiles Zinc finger RING-type profile. 226 294 IPR001841 -
Vimu7g00679 400 Pfam RING-H2 zinc finger domain 268 294 IPR024766 GO:0008270
Vimu7g00679 400 SUPERFAMILY RING/U-box 208 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00679 Vimu-Chr7 6798913 6804412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00679 48 378 C3H Transcription Factor Family AT3G47990 66.766 8.26e-151 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00679 K16284 - gmx:100812016 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00679 7 6798913 6804412 Vimu7g00679 7 6798913 6804412 ECH